Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g2998 ATGTCACAAGATTCTGAGGAGATAAAGACGATTGAGCAGTGGAAATGGTCCGAAATGCAAGGCCTTGAGCTCGTCTCTTCTGATCCTCCTCCTCCTTCTTCTCCTTCTCTTGACTCGTTTATAATCAACAACCCATCAGTCCCAACGGCCAAACTCACAGACCCTGAGGACCTCAGGCCCAAGGAAGAGGCTCAAGGCGGAATTGGCAGAGCCACCAACGGAGAAATGGAGTCTACCAGTGATTCCAAGAAGGAAAACGGCGGTGGCACCAGCGGGGAGAAGCCTGAGGCTGTCACCGCCGTTGGGTTTGGGGAGCTTTTCAGATTCGCCGATGGGTTGGATTACGTGTTGATGGCAATTGGGTCGGTTGGAGCCCTCGTCCATGGTTGCTCTCTGCCTCTGTTTCTTCGATTCTTTGCCGATCTTGTTAACTCCTTTGGGTCTTACGCCAATGATGTGGATAAGATGATGCAGGAGGTTTTGAAGTATGCATTCTACTTTCTCGTGGTTGGAGCAGCGATATGGGCGTCATCCTGGGCAGAGATTTCTTGTTGGATGTGGACCGGCGAGCGGCAGTCCACGAAGATGAGGATCAAGTACCTAGAAGCAGCACTGGACCAGGACATTCAGTATTTTGATACAGAGGTGCGAACATCGGACGTCGTTTTCGCCATCAACACTGACGCAGTGATGGTCCAAGACGCCATTAGTGAGAAGCTGGGCAACTTCATCCACTATATGGCAACTTTTGTGTCTGGATTCGTTGTGGGTTTCACTGCTGTGTGGCAATTGGCGTTGGTAACTCTTGCGGTGGTTCCTCTGATTGCGGTAATCGGCGGCATCTACACCACTACAATAGCCAAGCTCACTGCCAAGACCCAGGAAGCTCTTTCAGAAGCTGGGAATATCGTCGAACAGACAATTGTTCAAATTCGAGTTGTATTTGCGTTCGTGGGCGAATCAAGAGCATTGCAGAGGTACTCCTCCGCATTGAAGATTTCTCAAAGGATAGGTTACAAGAGTGGATTCTCCAAGGGTATGGGATTGGGCGCCACTTACTTTGTTGTTTTCTGCTGTTACGCTCTTCTGCTCTGGTACGGAGGTTATCTTGTTAGGCATCACGCCACCAATGGCGGTCTCGCCATAGCCACCATGTTTGCAGTGATGATTGGCGGACTGGCATTGGGGCAATCTGCTCCGAGCATGAGTTCATTCGCAAAGGCCAAAGTTGCAGCTGGCAAAATCTACCGTATAATCGACCATAAGCCCACTCTAAACCGCAATAACGAATCTGGTTTGGAATTAGAGTCAGTTTCAGGACTGGTTGAGCTGAAGAATGTAGATTTCTCATACCCATCAAGGCCAGATGTAAGGATCCTCAACAATTTCTCCCTAACTGTCCCTGCCGGAAAAACAATAGCACTAGTCGGTAGCAGTGGCTCCGGCAAGAGCACCGTTGTCTCCCTAATTGAAAGATTCTATGACCCCAGTTCAGGTGAAGTTCTACTAGATGGGCGTGACATAAAAACTTTGAAGCTAAGATGGTTAAGGCAGCAGATAGGACTGGTGAGCCAAGAACCTGCTCTTTTTGCCACCACCATCAAGGAGAATATTCTCTTGGGCAGGCCTGATGCAGACCAAGTCGAGGTGGAGGAAGCTGCACGAGTCGCCAATGCTCATTCATTCATCATCAAACTTCCTGAAGGCTATGACACCCAGGAAAAAGGTGCTATTGACATAGCATGCTGTGGAAGAAATAATGATGACATGAAGAAGATGGGTAGGAGAAAGAGGACTGCAGCTTTCTGGGGGCAGAAGCAGAGGATTGCAATAGCAAGGGCAATGCTGAAAAACCCTGCCATCCTACTCCTAGATGAGGCGACTAGTGCATTGGACTCTGAGTCGGAAAAGCTTGTACAGGAGGCTCTTGATCGTTTCATGATTGGGCGGACCACTCTTGTTATTGCCCATCGTCTCTCCACCATTCGCAAGGCTGACCTTGTGGCTGTACTCCAACAAGGAAGCGTTTCTGAAATTGGAACACATGACGAGCTCATTGCTAAGGGAGAGAATGGTGTATATGCCAAGCTCATCCGAATGCAGGAGATGGCACATGAAACTGCTCTCAATAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCCAGGAACTCAGTGAGCTCCCCAATAATTGCACGCAATTCTTCCTATGGACGATCGCCATATTCACGTCGGTTATCTGACTTCTCCACGTCTGATTTTAGTCTTTCTCTGGATGCTTCACTTCCCAATTACAGGCTTGAAAAACTAGCCTTTAAGGAGCAGGCCAGTTCCTTTTGGCGTCTTGTGAAAATGAATTCACCCGAATGGCTCTATGCATTACTTGGTTCTGTTGGCTCTGTTGTTTGTGGGTTTTTAAGCGCGTTCTTTGCATACGTTCTAAGTGCTGTTCTCAGTGTCTATTACAATCCAGATCATGCTTTCATGAGCAGAGAAATAATAAAGTACTGCTACTTATTAATCGGACTTTCATCAGCTGCTCTTCTCTTCAATACCATACAGCATTTCTTCTGGGATATTGTGGGAGAGAACCTCACCAAACGTGTTAGAGAGAAGATGCTGACAGCAGTACTGAAAAATGAAATGGCATGGTTCGATCAGGAAGAAAATGAGAGTGCAAAGATTGCTGCAAGGCTGGCTCTTGACGCAAACAACGTCAGATCAGCCATTGGAGATAGGATTTCTGTGATTGTACAGAACACATCACTCATGCTAGTTGCATGCACTGCCGGGTTTGTTTTGCAGTGGCGCCTTTCTCTTGTCCTTGTTGCCGTCTTCCCTGTGGTTGTTGCGGCCACTGTTCTACAGAAAATGTTCATGACTGGTTTCTCAGGAGACCTTGAGGCCAACCATGCCAAGGCCACACAACTAGCAGGGGAGGCTATAGCCAATGTAAGGACAGTTGCTGCGTTCAACTCAGAGGAAAAGATTGTCAGACTTTTCTCAACCAACCTTGAGATCCCACTACGACGCTGCTTTTGGAAGGGACAGATTGCCGGTAGCGGATTTGGTGTTGCTCAGTTCTCTCTTTATGCTTCCTATGCTCTAGGTCTTTGGTATGCCTCGTGGCTTGTGAAGCATGGGCTCTCTGATTTTTCAAAGGCAATCCGTGTTTTCATGGTCCTTATGGTTTCTGCAAATGGTGCAGCTGAAACACTCACTCTCGCTCCCGACTTTATTAAGGGTGGGCGAGCTATGCGTTCAGTCTTTGCCCTTCTTGACCGTAAAACTGAAATTGAACCTGATGATCCAGATGCCACCCCAGTCCCAGATAAACTTCGTGGGGAAGTTGAATTTAAACATGTTGACTTTTCCTACCCAACTCGTCCTGACATCCCTGTCTTTAGAGACCTTAGTTTGCGTGCACGAGCAGGAAAGACTCTTGCTCTCGTTGGTCCCAGTGGGTGTGGCAAGAGCTCTGTTATTGCATTAGTCCAAAGATTCTATGAGCCAACATCAGGACGAGTTATGATTGATGGAAAGGATATCCGTAAATTCAATCTCAAGTCCTTGAGAAAACACATTGCGATGGTCCCCCAGGAGCCATGCTTATTTGCTGCTTCCATACACGATAATATAGCTTATGGCCACGAATCAGCTACCGAGGCCGAGATCATTGAAGCTGCTACATTGGCAAATGCTCACAAGTTCATATCTGCATTGCCAGAAGGGTATAAAACTTTTGTTGGGGAGAGGGGAGTTCAACTATCGGGTGGACAGAAACAACGAATTGCAATTGCCCGTGCTCTGATCAGGAAGGCAGAGCTTATGCTACTAGATGAGGCAACAAGCGCCCTCGATGCCGAGTCTGAGCGATCCGTCCAGGAGGCTCTCGACCGAGCTTGTTCAGGAAAAACAACAATCGTAGTTGCTCATCGACTATCAACTATCAGGAATGCCCATGTCATTGCAGTAATTGATGATGGTAAAGTAGCCGAGCAGGGATCACACTCACATTTGTTGAAAAATTATCCCGATGGGTGTTACGCCCGGATGATACAATTACAAAGATTCACACACAGCCAAGTCATTGGTATGACTTCAGGTTCAACTTCCACAGCAAGAACTAGAGAGGATGAGGACAGAGAGAGCTAG 4155 47.61 MSQDSEEIKTIEQWKWSEMQGLELVSSDPPPPSSPSLDSFIINNPSVPTAKLTDPEDLRPKEEAQGGIGRATNGEMESTSDSKKENGGGTSGEKPEAVTAVGFGELFRFADGLDYVLMAIGSVGALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALDQDIQYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIYTTTIAKLTAKTQEALSEAGNIVEQTIVQIRVVFAFVGESRALQRYSSALKISQRIGYKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAGKIYRIIDHKPTLNRNNESGLELESVSGLVELKNVDFSYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPSSGEVLLDGRDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADQVEVEEAARVANAHSFIIKLPEGYDTQEKGAIDIACCGRNNDDMKKMGRRKRTAAFWGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEMAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASLPNYRLEKLAFKEQASSFWRLVKMNSPEWLYALLGSVGSVVCGFLSAFFAYVLSAVLSVYYNPDHAFMSREIIKYCYLLIGLSSAALLFNTIQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESAKIAARLALDANNVRSAIGDRISVIVQNTSLMLVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEANHAKATQLAGEAIANVRTVAAFNSEEKIVRLFSTNLEIPLRRCFWKGQIAGSGFGVAQFSLYASYALGLWYASWLVKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFALLDRKTEIEPDDPDATPVPDKLRGEVEFKHVDFSYPTRPDIPVFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPTSGRVMIDGKDIRKFNLKSLRKHIAMVPQEPCLFAASIHDNIAYGHESATEAEIIEAATLANAHKFISALPEGYKTFVGERGVQLSGGQKQRIAIARALIRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNYPDGCYARMIQLQRFTHSQVIGMTSGSTSTARTREDEDRES 1384
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 44578630 44584600 + Lag0027043.1 Lac10g2998 585529
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac10g2998 1384 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 442 698 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Lac10g2998 1384 MobiDBLite consensus disorder prediction 21 95 - -
Lac10g2998 1384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 433 701 IPR027417 -
Lac10g2998 1384 CDD ABC_MTABC3_MDL1_MDL2 442 701 - -
Lac10g2998 1384 FunFam ABC transporter B family member 1 773 1082 - -
Lac10g2998 1384 SMART AAA_5 1144 1336 IPR003593 GO:0016887(InterPro)
Lac10g2998 1384 SMART AAA_5 469 675 IPR003593 GO:0016887(InterPro)
Lac10g2998 1384 ProSitePatterns ABC transporters family signature. 1256 1270 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Lac10g2998 1384 Pfam ABC transporter 1136 1284 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Lac10g2998 1384 Gene3D ABC transporter type 1, transmembrane domain 91 421 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Lac10g2998 1384 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1117 1353 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Lac10g2998 1384 FunFam ABC transporter B family member 1 1107 1357 - -
Lac10g2998 1384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1108 1356 IPR027417 -
Lac10g2998 1384 Gene3D - 432 715 IPR027417 -
Lac10g2998 1384 FunFam ABC transporter B family member 1 432 702 - -
Lac10g2998 1384 CDD ABC_6TM_Pgp_ABCB1_D1_like 118 415 - -
Lac10g2998 1384 CDD ABC_MTABC3_MDL1_MDL2 1117 1356 - -
Lac10g2998 1384 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 119 407 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Lac10g2998 1384 FunFam ABC transporter B family member 1 105 440 - -
Lac10g2998 1384 SUPERFAMILY ABC transporter transmembrane region 781 1103 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Lac10g2998 1384 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 794 1081 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Lac10g2998 1384 PANTHER ABC TRANSPORTER B FAMILY 78 726 IPR039421 GO:0005887(PANTHER)|GO:0042626(PANTHER)
Lac10g2998 1384 Gene3D - 1108 1363 IPR027417 -
Lac10g2998 1384 Gene3D ABC transporter type 1, transmembrane domain 770 1104 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Lac10g2998 1384 Pfam ABC transporter 460 629 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Lac10g2998 1384 FunFam ABC transporter B family member 19 1083 1105 - -
Lac10g2998 1384 CDD ABC_6TM_Pgp_ABCB1_D2_like 784 1099 - -
Lac10g2998 1384 Pfam ABC transporter transmembrane region 120 391 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Lac10g2998 1384 Pfam ABC transporter transmembrane region 796 1064 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Lac10g2998 1384 SUPERFAMILY ABC transporter transmembrane region 106 420 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2998 Lac-Chr10:44578630 Lac11g2437 Lac-Chr11:40543018 0.00E+00 dispersed
Lac10g2998 Lac-Chr10:44578630 Lac8g2676 Lac-Chr8:44256842 0.00E+00 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g2998 K05658 - csv:101220974 2385.14