Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac10g2998 | ATGTCACAAGATTCTGAGGAGATAAAGACGATTGAGCAGTGGAAATGGTCCGAAATGCAAGGCCTTGAGCTCGTCTCTTCTGATCCTCCTCCTCCTTCTTCTCCTTCTCTTGACTCGTTTATAATCAACAACCCATCAGTCCCAACGGCCAAACTCACAGACCCTGAGGACCTCAGGCCCAAGGAAGAGGCTCAAGGCGGAATTGGCAGAGCCACCAACGGAGAAATGGAGTCTACCAGTGATTCCAAGAAGGAAAACGGCGGTGGCACCAGCGGGGAGAAGCCTGAGGCTGTCACCGCCGTTGGGTTTGGGGAGCTTTTCAGATTCGCCGATGGGTTGGATTACGTGTTGATGGCAATTGGGTCGGTTGGAGCCCTCGTCCATGGTTGCTCTCTGCCTCTGTTTCTTCGATTCTTTGCCGATCTTGTTAACTCCTTTGGGTCTTACGCCAATGATGTGGATAAGATGATGCAGGAGGTTTTGAAGTATGCATTCTACTTTCTCGTGGTTGGAGCAGCGATATGGGCGTCATCCTGGGCAGAGATTTCTTGTTGGATGTGGACCGGCGAGCGGCAGTCCACGAAGATGAGGATCAAGTACCTAGAAGCAGCACTGGACCAGGACATTCAGTATTTTGATACAGAGGTGCGAACATCGGACGTCGTTTTCGCCATCAACACTGACGCAGTGATGGTCCAAGACGCCATTAGTGAGAAGCTGGGCAACTTCATCCACTATATGGCAACTTTTGTGTCTGGATTCGTTGTGGGTTTCACTGCTGTGTGGCAATTGGCGTTGGTAACTCTTGCGGTGGTTCCTCTGATTGCGGTAATCGGCGGCATCTACACCACTACAATAGCCAAGCTCACTGCCAAGACCCAGGAAGCTCTTTCAGAAGCTGGGAATATCGTCGAACAGACAATTGTTCAAATTCGAGTTGTATTTGCGTTCGTGGGCGAATCAAGAGCATTGCAGAGGTACTCCTCCGCATTGAAGATTTCTCAAAGGATAGGTTACAAGAGTGGATTCTCCAAGGGTATGGGATTGGGCGCCACTTACTTTGTTGTTTTCTGCTGTTACGCTCTTCTGCTCTGGTACGGAGGTTATCTTGTTAGGCATCACGCCACCAATGGCGGTCTCGCCATAGCCACCATGTTTGCAGTGATGATTGGCGGACTGGCATTGGGGCAATCTGCTCCGAGCATGAGTTCATTCGCAAAGGCCAAAGTTGCAGCTGGCAAAATCTACCGTATAATCGACCATAAGCCCACTCTAAACCGCAATAACGAATCTGGTTTGGAATTAGAGTCAGTTTCAGGACTGGTTGAGCTGAAGAATGTAGATTTCTCATACCCATCAAGGCCAGATGTAAGGATCCTCAACAATTTCTCCCTAACTGTCCCTGCCGGAAAAACAATAGCACTAGTCGGTAGCAGTGGCTCCGGCAAGAGCACCGTTGTCTCCCTAATTGAAAGATTCTATGACCCCAGTTCAGGTGAAGTTCTACTAGATGGGCGTGACATAAAAACTTTGAAGCTAAGATGGTTAAGGCAGCAGATAGGACTGGTGAGCCAAGAACCTGCTCTTTTTGCCACCACCATCAAGGAGAATATTCTCTTGGGCAGGCCTGATGCAGACCAAGTCGAGGTGGAGGAAGCTGCACGAGTCGCCAATGCTCATTCATTCATCATCAAACTTCCTGAAGGCTATGACACCCAGGAAAAAGGTGCTATTGACATAGCATGCTGTGGAAGAAATAATGATGACATGAAGAAGATGGGTAGGAGAAAGAGGACTGCAGCTTTCTGGGGGCAGAAGCAGAGGATTGCAATAGCAAGGGCAATGCTGAAAAACCCTGCCATCCTACTCCTAGATGAGGCGACTAGTGCATTGGACTCTGAGTCGGAAAAGCTTGTACAGGAGGCTCTTGATCGTTTCATGATTGGGCGGACCACTCTTGTTATTGCCCATCGTCTCTCCACCATTCGCAAGGCTGACCTTGTGGCTGTACTCCAACAAGGAAGCGTTTCTGAAATTGGAACACATGACGAGCTCATTGCTAAGGGAGAGAATGGTGTATATGCCAAGCTCATCCGAATGCAGGAGATGGCACATGAAACTGCTCTCAATAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCCAGGAACTCAGTGAGCTCCCCAATAATTGCACGCAATTCTTCCTATGGACGATCGCCATATTCACGTCGGTTATCTGACTTCTCCACGTCTGATTTTAGTCTTTCTCTGGATGCTTCACTTCCCAATTACAGGCTTGAAAAACTAGCCTTTAAGGAGCAGGCCAGTTCCTTTTGGCGTCTTGTGAAAATGAATTCACCCGAATGGCTCTATGCATTACTTGGTTCTGTTGGCTCTGTTGTTTGTGGGTTTTTAAGCGCGTTCTTTGCATACGTTCTAAGTGCTGTTCTCAGTGTCTATTACAATCCAGATCATGCTTTCATGAGCAGAGAAATAATAAAGTACTGCTACTTATTAATCGGACTTTCATCAGCTGCTCTTCTCTTCAATACCATACAGCATTTCTTCTGGGATATTGTGGGAGAGAACCTCACCAAACGTGTTAGAGAGAAGATGCTGACAGCAGTACTGAAAAATGAAATGGCATGGTTCGATCAGGAAGAAAATGAGAGTGCAAAGATTGCTGCAAGGCTGGCTCTTGACGCAAACAACGTCAGATCAGCCATTGGAGATAGGATTTCTGTGATTGTACAGAACACATCACTCATGCTAGTTGCATGCACTGCCGGGTTTGTTTTGCAGTGGCGCCTTTCTCTTGTCCTTGTTGCCGTCTTCCCTGTGGTTGTTGCGGCCACTGTTCTACAGAAAATGTTCATGACTGGTTTCTCAGGAGACCTTGAGGCCAACCATGCCAAGGCCACACAACTAGCAGGGGAGGCTATAGCCAATGTAAGGACAGTTGCTGCGTTCAACTCAGAGGAAAAGATTGTCAGACTTTTCTCAACCAACCTTGAGATCCCACTACGACGCTGCTTTTGGAAGGGACAGATTGCCGGTAGCGGATTTGGTGTTGCTCAGTTCTCTCTTTATGCTTCCTATGCTCTAGGTCTTTGGTATGCCTCGTGGCTTGTGAAGCATGGGCTCTCTGATTTTTCAAAGGCAATCCGTGTTTTCATGGTCCTTATGGTTTCTGCAAATGGTGCAGCTGAAACACTCACTCTCGCTCCCGACTTTATTAAGGGTGGGCGAGCTATGCGTTCAGTCTTTGCCCTTCTTGACCGTAAAACTGAAATTGAACCTGATGATCCAGATGCCACCCCAGTCCCAGATAAACTTCGTGGGGAAGTTGAATTTAAACATGTTGACTTTTCCTACCCAACTCGTCCTGACATCCCTGTCTTTAGAGACCTTAGTTTGCGTGCACGAGCAGGAAAGACTCTTGCTCTCGTTGGTCCCAGTGGGTGTGGCAAGAGCTCTGTTATTGCATTAGTCCAAAGATTCTATGAGCCAACATCAGGACGAGTTATGATTGATGGAAAGGATATCCGTAAATTCAATCTCAAGTCCTTGAGAAAACACATTGCGATGGTCCCCCAGGAGCCATGCTTATTTGCTGCTTCCATACACGATAATATAGCTTATGGCCACGAATCAGCTACCGAGGCCGAGATCATTGAAGCTGCTACATTGGCAAATGCTCACAAGTTCATATCTGCATTGCCAGAAGGGTATAAAACTTTTGTTGGGGAGAGGGGAGTTCAACTATCGGGTGGACAGAAACAACGAATTGCAATTGCCCGTGCTCTGATCAGGAAGGCAGAGCTTATGCTACTAGATGAGGCAACAAGCGCCCTCGATGCCGAGTCTGAGCGATCCGTCCAGGAGGCTCTCGACCGAGCTTGTTCAGGAAAAACAACAATCGTAGTTGCTCATCGACTATCAACTATCAGGAATGCCCATGTCATTGCAGTAATTGATGATGGTAAAGTAGCCGAGCAGGGATCACACTCACATTTGTTGAAAAATTATCCCGATGGGTGTTACGCCCGGATGATACAATTACAAAGATTCACACACAGCCAAGTCATTGGTATGACTTCAGGTTCAACTTCCACAGCAAGAACTAGAGAGGATGAGGACAGAGAGAGCTAG | 4155 | 47.61 | MSQDSEEIKTIEQWKWSEMQGLELVSSDPPPPSSPSLDSFIINNPSVPTAKLTDPEDLRPKEEAQGGIGRATNGEMESTSDSKKENGGGTSGEKPEAVTAVGFGELFRFADGLDYVLMAIGSVGALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALDQDIQYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIYTTTIAKLTAKTQEALSEAGNIVEQTIVQIRVVFAFVGESRALQRYSSALKISQRIGYKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAGKIYRIIDHKPTLNRNNESGLELESVSGLVELKNVDFSYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPSSGEVLLDGRDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADQVEVEEAARVANAHSFIIKLPEGYDTQEKGAIDIACCGRNNDDMKKMGRRKRTAAFWGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEMAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASLPNYRLEKLAFKEQASSFWRLVKMNSPEWLYALLGSVGSVVCGFLSAFFAYVLSAVLSVYYNPDHAFMSREIIKYCYLLIGLSSAALLFNTIQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESAKIAARLALDANNVRSAIGDRISVIVQNTSLMLVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEANHAKATQLAGEAIANVRTVAAFNSEEKIVRLFSTNLEIPLRRCFWKGQIAGSGFGVAQFSLYASYALGLWYASWLVKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFALLDRKTEIEPDDPDATPVPDKLRGEVEFKHVDFSYPTRPDIPVFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPTSGRVMIDGKDIRKFNLKSLRKHIAMVPQEPCLFAASIHDNIAYGHESATEAEIIEAATLANAHKFISALPEGYKTFVGERGVQLSGGQKQRIAIARALIRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNYPDGCYARMIQLQRFTHSQVIGMTSGSTSTARTREDEDRES | 1384 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 44578630 | 44584600 | + | Lag0027043.1 | Lac10g2998 | 585529 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac10g2998 | 1384 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 442 | 698 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lac10g2998 | 1384 | MobiDBLite | consensus disorder prediction | 21 | 95 | - | - | |
| Lac10g2998 | 1384 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 433 | 701 | IPR027417 | - | |
| Lac10g2998 | 1384 | CDD | ABC_MTABC3_MDL1_MDL2 | 442 | 701 | - | - | |
| Lac10g2998 | 1384 | FunFam | ABC transporter B family member 1 | 773 | 1082 | - | - | |
| Lac10g2998 | 1384 | SMART | AAA_5 | 1144 | 1336 | IPR003593 | GO:0016887(InterPro) | |
| Lac10g2998 | 1384 | SMART | AAA_5 | 469 | 675 | IPR003593 | GO:0016887(InterPro) | |
| Lac10g2998 | 1384 | ProSitePatterns | ABC transporters family signature. | 1256 | 1270 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lac10g2998 | 1384 | Pfam | ABC transporter | 1136 | 1284 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lac10g2998 | 1384 | Gene3D | ABC transporter type 1, transmembrane domain | 91 | 421 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Lac10g2998 | 1384 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1117 | 1353 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lac10g2998 | 1384 | FunFam | ABC transporter B family member 1 | 1107 | 1357 | - | - | |
| Lac10g2998 | 1384 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1108 | 1356 | IPR027417 | - | |
| Lac10g2998 | 1384 | Gene3D | - | 432 | 715 | IPR027417 | - | |
| Lac10g2998 | 1384 | FunFam | ABC transporter B family member 1 | 432 | 702 | - | - | |
| Lac10g2998 | 1384 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 118 | 415 | - | - | |
| Lac10g2998 | 1384 | CDD | ABC_MTABC3_MDL1_MDL2 | 1117 | 1356 | - | - | |
| Lac10g2998 | 1384 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 119 | 407 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Lac10g2998 | 1384 | FunFam | ABC transporter B family member 1 | 105 | 440 | - | - | |
| Lac10g2998 | 1384 | SUPERFAMILY | ABC transporter transmembrane region | 781 | 1103 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Lac10g2998 | 1384 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 794 | 1081 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Lac10g2998 | 1384 | PANTHER | ABC TRANSPORTER B FAMILY | 78 | 726 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| Lac10g2998 | 1384 | Gene3D | - | 1108 | 1363 | IPR027417 | - | |
| Lac10g2998 | 1384 | Gene3D | ABC transporter type 1, transmembrane domain | 770 | 1104 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Lac10g2998 | 1384 | Pfam | ABC transporter | 460 | 629 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lac10g2998 | 1384 | FunFam | ABC transporter B family member 19 | 1083 | 1105 | - | - | |
| Lac10g2998 | 1384 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 784 | 1099 | - | - | |
| Lac10g2998 | 1384 | Pfam | ABC transporter transmembrane region | 120 | 391 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Lac10g2998 | 1384 | Pfam | ABC transporter transmembrane region | 796 | 1064 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Lac10g2998 | 1384 | SUPERFAMILY | ABC transporter transmembrane region | 106 | 420 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g2998 | Lac-Chr10:44578630 | Lac11g2437 | Lac-Chr11:40543018 | 0.00E+00 | dispersed | |
| Lac10g2998 | Lac-Chr10:44578630 | Lac8g2676 | Lac-Chr8:44256842 | 0.00E+00 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac10g2998 | K05658 | - | csv:101220974 | 2385.14 |