Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3020 ATGGCGTCCAGCGACATCGAAACCGCCGGTCCGGGGCCGGCGTCCCCGAAGGACTATTTGGACCCGCTGCCGGTGCCGATCATCGACATGGAAGAGTTCGGCAAATGGTCGTTTTACAGAGCTATAATCGCCGAGTTCGTCGCCACTCTCTTGTTCCTCTACGTCGCCGTTTTGACGGTCATCGGAAATAAAACCCAGACGGATCCGCTCGTCGGCGGGAATGTCTGCGGCGGCGTTGGCACTACCGGAATCGCGTGGGTCTTCGGCGGAATGATCTTCATCCTCGTTTACTGCACCGCCGGGATCTCTGGAGGGCACATAAATCCGGCGGTGTCGTTCGGAATGTTTGTGGCGAGAAGGATATCGCTGGTGCGGGCGGTGCTGTACATTGTGGCTCAGTGCGTGGGGGCTCTGTGCGGCTGCGCGTTGGTCAAGACGCTGCAGAGGGATCGGTTCAACCACTACGGCGGCGCCGCCAACAAGCTCGTCGACGGCTACAGCGAAGGCACCGGCCTCGCCGTCGAGATCGTCGGCACCTTCGTACTTCTTTACACCGTCTTCTCCGCCACCGATCCCAAACGAAACGCCCGAGATTCCCATGTTCCGGTGTTGGCCCCACTCCCCATTGGCTTCGCTGTTTTCATGGTTCACCTCGCTACAATTCCGATCACCGGCACCGGCATCAACCCGGCTCGAAGCTTCGGCGCCGCCGTGATCATCAACGATAAAAAAGTTTGGAAAGATCACTGGATTTTTTGGGTCGGGCCGCTCATCGGAGCTACCATTGCTGCAATATATTACCAATATGTTCTTCGAGCCTCCGCCGTGAAAGCAATCGGATCTTTCAGAAGCTCGCCACCGACTCGCTACTAA 873 57.85 MASSDIETAGPGPASPKDYLDPLPVPIIDMEEFGKWSFYRAIIAEFVATLLFLYVAVLTVIGNKTQTDPLVGGNVCGGVGTTGIAWVFGGMIFILVYCTAGISGGHINPAVSFGMFVARRISLVRAVLYIVAQCVGALCGCALVKTLQRDRFNHYGGAANKLVDGYSEGTGLAVEIVGTFVLLYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIINDKKVWKDHWIFWVGPLIGATIAAIYYQYVLRASAVKAIGSFRSSPPTRY 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44771310 44774056 + Lag0027065.1 Lac10g3020 585551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3020 290 CDD MIP 40 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g3020 290 Gene3D Glycerol uptake facilitator protein. 25 288 IPR023271 -
Lac10g3020 290 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Lac10g3020 290 NCBIfam MIP family channel protein 44 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g3020 290 SUPERFAMILY Aquaporin-like 32 272 IPR023271 -
Lac10g3020 290 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 16 284 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Lac10g3020 290 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g3020 290 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g3020 290 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g3020 290 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g3020 290 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g3020 290 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g3020 290 FunFam Probable aquaporin PIP1-2 25 286 - -
Lac10g3020 290 Pfam Major intrinsic protein 33 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3020 Lac-Chr10:44771310 Lac1g2126 Lac-Chr1:42710492 3.20E-124 dispersed
Lac1g2122 Lac-Chr1:42679618 Lac10g3020 Lac-Chr10:44771310 9.60E-110 wgd
Lac10g3020 Lac-Chr10:44771310 Lac13g0708 Lac-Chr13:5428713 3.50E-75 wgd
Lac10g3020 Lac-Chr10:44771310 Lac8g2417 Lac-Chr8:42264865 2.20E-117 wgd
Lac10g3020 Lac-Chr10:44771310 Lac9g2580 Lac-Chr9:44358020 2.90E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3020 K09872 - csv:101214142 513.457