Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3022 ATGGGTAACATTGGGAGTAGCGGTTCCAATGGCCGGAGAAGACACGGAACCCGCCGGAGCCATCCGACTCCGCCACCACCGGCTCCACCGCAGCCCGAATTAACGAGTAATCGTTACGTTTTTGCCGCTGCTACGCCCTACCCATCGCAATACCCTAACCATCCGAATCACCCGCCGCCGTACTACCAGTATCCCGGTTACTTTCCGCCGCCGCCTGGCCCGCCGCCGTCCATGCCGATGCCCTTGCCGGCGCCTTACGACCACCACCACCGCGCAGGCCATCCCCAGATGGATCCTGCGCATTGGGTCGGTGGGAGGTACCCTTATGGCCCTCCTATGCCGCCCCAAACGCCCTATGTTGAGCATCAGAAGGCGGTTACGATTCGGAATGATGTTAATCTCAAGAAGGAAACTCTTAAGGTTGAGCCTGATGAACAAAACCCCGGCCAATTCCTTGTATCTTTCACGTTCGATGCCACCGTCGCTGGGAGTATCACCATCTTCTTCTTTGCGAAAGAAGGCGAAGATTGTAACTTGACACCTGTAAAGGAAGACACTTTTCAACCAGTGACCGTCCATTTTGAACAAGGCCTCGGACAGAAGTTCAGACAACCTTCTGGAACGGGAATAGATTTCTCAAAGTTTGAAGAGTCAGAATTACTGAAAGTAAACGACACCGATGTCTATCCATTAGCTGTAAAAGCTGAGGCTTCCACTGACTGTCAAACTGGCCCAGACGGTACCGTAGTGCCTGAGACCATGAATTCTCAGATAACCCAGGCAGTGTTTGAGAAAGATAAAGGTGAATATCAGGTTAGAGTGTTGAAACAAATCCTGTGGGTCAATGGTATGAGATATGAGCTGCAGGAGATCTATGGAATTGGCAATTCAGTCGAGGGCGATGTAGATGGAAATGACCCTGGAAAGGAATGTGTCATTTGCTTGTCAGAACCACGAGATACGACCGTCCTTCCCTGCCGACACATGTGTATGTGTAGTGGCTGTGCTAAGGTGTTGAGGTTCCAGACGAATCGATGCCCAATTTGCAGACAACCGGTCGATAGGCTCTTAGAGATAAGGGTCAGCAATGGACCGGAACCAGAACCAGAAGAATAA 1116 51.34 MGNIGSSGSNGRRRHGTRRSHPTPPPPAPPQPELTSNRYVFAAATPYPSQYPNHPNHPPPYYQYPGYFPPPPGPPPSMPMPLPAPYDHHHRAGHPQMDPAHWVGGRYPYGPPMPPQTPYVEHQKAVTIRNDVNLKKETLKVEPDEQNPGQFLVSFTFDATVAGSITIFFFAKEGEDCNLTPVKEDTFQPVTVHFEQGLGQKFRQPSGTGIDFSKFEESELLKVNDTDVYPLAVKAEASTDCQTGPDGTVVPETMNSQITQAVFEKDKGEYQVRVLKQILWVNGMRYELQEIYGIGNSVEGDVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVDRLLEIRVSNGPEPEPEE 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44793030 44795788 + Lag0027067.1 Lac10g3022 585553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3022 371 ProSiteProfiles Zinc finger RING-type profile. 311 350 IPR001841 -
Lac10g3022 371 MobiDBLite consensus disorder prediction 1 58 - -
Lac10g3022 371 CDD mRING-HC-C3HC5_MGRN1-like 309 350 IPR045195 -
Lac10g3022 371 FunFam probable E3 ubiquitin-protein ligase LOG2 295 360 - -
Lac10g3022 371 Pfam Zinc finger, C3HC4 type (RING finger) 309 355 - -
Lac10g3022 371 SMART ring_2 311 349 IPR001841 -
Lac10g3022 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 360 IPR013083 -
Lac10g3022 371 SUPERFAMILY RING/U-box 310 356 - -
Lac10g3022 371 PANTHER MAHOGUNIN 1 363 IPR045194 GO:0016567(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3022 Lac-Chr10:44793030 Lac7g0788 Lac-Chr7:6301215 6.80E-79 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3022 K27504 - csv:101216150 603.979