Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g3025 | ATGTCAAGTAATCCCTTTTCTCTTCTCTCTTCCACTCCCACTGCCTTTGCTCCACAGCAGCAAGATGCTAACCCTAACCCTAACCCTAAACCGAAACCCTCCGCTGCGGCGAAGAAGAAGAGAAACCTCCCCGGAACCCCAGATCCAGATGCGGAGGTTATTGCTTTGTCGCCGAAATCGCTCATGGCGACGAATAGATTCATATGCGAAATTTGCAACAAGGGGTTTCAGAGAGATCAGAACCTACAACTTCACCGACGAGGACATAACCTACCGTGGAAGCTACGACAGCGGACGAACAAGGAGGCGATCAAGAAGAAGGTGTATATTTGCCCGGAGAAGACGTGCGTCCACCACGATCCGTCGCGAGCTCTCGGTGACCTCACCGGAATAAAGAAACATTTCAGCCGGAAACATGGCGAGAAGAAGTGGAAATGTGAGAAGTGCTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGGACAAGAGAATATAAGTGTGATTGTGGAACCCTTTTTTCCAGGAAAGACAGCTTCATAACCCACAGAGCATTTTGCGATGCTTTAGCTGAAGAAAGTGCAAGAATCACAACAGTTTCAGCCACAAATATTCTCAATAATCTCAGAAATGATTCAATTCTTCTTCATCATCAACAAGATCCACAGCAATCTTTGATCGATCATCAGCAAAATAATCTTCAATCTCTTGGTGATGTTTCTGGGCTTTCCCAATTCAGCCATTCAGATCATTTTTTGAGAGATTTTGAAGATCAGCAGCAGAAGAACAGATCTCCATTGTCACTTTGGTTGAACCAAGCTTCTGCTGAAACTGCAATGAACAATAACAACAACAATATTTCCAGCTTTTTTGGAGCTTCTTCTTCCTCGTCCAATCTTTTCGGATCGATAAACGAAACCGGGATCTCGATGTTGCCGGTGATCGAGAAGGACGAGGTTGAGAATAAGGGAAGCTTGTCGAAAGCTACCGCGCTGTTGTCGGGTCAATCACCTCAGTCTGTTGTTTCGTCTTCTCCGATGTCGGCTACTGCCCTTCTGCAAAAAGCTGCTCTTATGGGCTCAACTAGAAGCAGCAACAATAATAATTCTCCGCTCTTTGGAGCGGGCGCTTTCGGAGTAATGAGCTCTTCGTCTTCGTCGTCGTCTTCACCTTCGAATAATGCAGTGAGTTTGAACTCTCTTAATAAATCTGGAAGCCTGACAATGACGGACTCGGTGCAGATGGTTGGTAGCAGCTCTGACTTGAGCTCGAATTGTCTCAGCCAGCTTCTGCTGCCACCGAACGGTAACAACGGTATGAGAAGTAGCGGTCAAACGAGGGACTTCCTCGGTGTCGGGGGAGGAGGAGAAGCGCCTCGGCCACCGTTCCTCCCGCCGGAGCTAGCGAAATTCGCCACCATAAATTCAACAATGGGACTAAGCCAATTTGCAGCCAACCACTAA | 1479 | 46.99 | MSSNPFSLLSSTPTAFAPQQQDANPNPNPKPKPSAAAKKKRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEAIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVSATNILNNLRNDSILLHHQQDPQQSLIDHQQNNLQSLGDVSGLSQFSHSDHFLRDFEDQQQKNRSPLSLWLNQASAETAMNNNNNNISSFFGASSSSSNLFGSINETGISMLPVIEKDEVENKGSLSKATALLSGQSPQSVVSSSPMSATALLQKAALMGSTRSSNNNNSPLFGAGAFGVMSSSSSSSSSPSNNAVSLNSLNKSGSLTMTDSVQMVGSSSDLSSNCLSQLLLPPNGNNGMRSSGQTRDFLGVGGGGEAPRPPFLPPELAKFATINSTMGLSQFAANH | 492 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 44810321 | 44812463 | - | Lag0027070.1 | Lac10g3025 | 585556 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g3025 | 492 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 23 | 461 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Lac10g3025 | 492 | FunFam | protein indeterminate-domain 12-like | 46 | 115 | - | - | |
Lac10g3025 | 492 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 122 | 201 | - | - | |
Lac10g3025 | 492 | SUPERFAMILY | beta-beta-alpha zinc fingers | 66 | 164 | IPR036236 | - | |
Lac10g3025 | 492 | Gene3D | Classic Zinc Finger | 119 | 201 | - | - | |
Lac10g3025 | 492 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 170 | 209 | - | - | |
Lac10g3025 | 492 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 105 | 139 | - | - | |
Lac10g3025 | 492 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Lac10g3025 | 492 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 143 | 167 | - | - | |
Lac10g3025 | 492 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 67 | 89 | IPR013087 | - | |
Lac10g3025 | 492 | Pfam | Zinc finger, C2H2 type | 67 | 89 | IPR013087 | - | |
Lac10g3025 | 492 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 69 | 89 | IPR013087 | - | |
Lac10g3025 | 492 | SMART | c2h2final6 | 109 | 139 | IPR013087 | - | |
Lac10g3025 | 492 | SMART | c2h2final6 | 144 | 164 | IPR013087 | - | |
Lac10g3025 | 492 | SMART | c2h2final6 | 67 | 89 | IPR013087 | - | |
Lac10g3025 | 492 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Lac10g3025 | 492 | Gene3D | Classic Zinc Finger | 46 | 118 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g3025 | Lac-Chr10:44810321 | Lac12g2443 | Lac-Chr12:41534019 | 7.30E-89 | dispersed | |
Lac8g2196 | Lac-Chr8:40265888 | Lac10g3025 | Lac-Chr10:44810321 | 3.70E-59 | transposed | |
Lac1g2114 | Lac-Chr1:42624689 | Lac10g3025 | Lac-Chr10:44810321 | 2.60E-90 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22849 | PF12171 | zf-C2H2_jaz | 7.20E-05 | CL0361 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g3025 | K25870 | - | csv:101213422 | 745.732 |