Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3025 ATGTCAAGTAATCCCTTTTCTCTTCTCTCTTCCACTCCCACTGCCTTTGCTCCACAGCAGCAAGATGCTAACCCTAACCCTAACCCTAAACCGAAACCCTCCGCTGCGGCGAAGAAGAAGAGAAACCTCCCCGGAACCCCAGATCCAGATGCGGAGGTTATTGCTTTGTCGCCGAAATCGCTCATGGCGACGAATAGATTCATATGCGAAATTTGCAACAAGGGGTTTCAGAGAGATCAGAACCTACAACTTCACCGACGAGGACATAACCTACCGTGGAAGCTACGACAGCGGACGAACAAGGAGGCGATCAAGAAGAAGGTGTATATTTGCCCGGAGAAGACGTGCGTCCACCACGATCCGTCGCGAGCTCTCGGTGACCTCACCGGAATAAAGAAACATTTCAGCCGGAAACATGGCGAGAAGAAGTGGAAATGTGAGAAGTGCTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGGACAAGAGAATATAAGTGTGATTGTGGAACCCTTTTTTCCAGGAAAGACAGCTTCATAACCCACAGAGCATTTTGCGATGCTTTAGCTGAAGAAAGTGCAAGAATCACAACAGTTTCAGCCACAAATATTCTCAATAATCTCAGAAATGATTCAATTCTTCTTCATCATCAACAAGATCCACAGCAATCTTTGATCGATCATCAGCAAAATAATCTTCAATCTCTTGGTGATGTTTCTGGGCTTTCCCAATTCAGCCATTCAGATCATTTTTTGAGAGATTTTGAAGATCAGCAGCAGAAGAACAGATCTCCATTGTCACTTTGGTTGAACCAAGCTTCTGCTGAAACTGCAATGAACAATAACAACAACAATATTTCCAGCTTTTTTGGAGCTTCTTCTTCCTCGTCCAATCTTTTCGGATCGATAAACGAAACCGGGATCTCGATGTTGCCGGTGATCGAGAAGGACGAGGTTGAGAATAAGGGAAGCTTGTCGAAAGCTACCGCGCTGTTGTCGGGTCAATCACCTCAGTCTGTTGTTTCGTCTTCTCCGATGTCGGCTACTGCCCTTCTGCAAAAAGCTGCTCTTATGGGCTCAACTAGAAGCAGCAACAATAATAATTCTCCGCTCTTTGGAGCGGGCGCTTTCGGAGTAATGAGCTCTTCGTCTTCGTCGTCGTCTTCACCTTCGAATAATGCAGTGAGTTTGAACTCTCTTAATAAATCTGGAAGCCTGACAATGACGGACTCGGTGCAGATGGTTGGTAGCAGCTCTGACTTGAGCTCGAATTGTCTCAGCCAGCTTCTGCTGCCACCGAACGGTAACAACGGTATGAGAAGTAGCGGTCAAACGAGGGACTTCCTCGGTGTCGGGGGAGGAGGAGAAGCGCCTCGGCCACCGTTCCTCCCGCCGGAGCTAGCGAAATTCGCCACCATAAATTCAACAATGGGACTAAGCCAATTTGCAGCCAACCACTAA 1479 46.99 MSSNPFSLLSSTPTAFAPQQQDANPNPNPKPKPSAAAKKKRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEAIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVSATNILNNLRNDSILLHHQQDPQQSLIDHQQNNLQSLGDVSGLSQFSHSDHFLRDFEDQQQKNRSPLSLWLNQASAETAMNNNNNNISSFFGASSSSSNLFGSINETGISMLPVIEKDEVENKGSLSKATALLSGQSPQSVVSSSPMSATALLQKAALMGSTRSSNNNNSPLFGAGAFGVMSSSSSSSSSPSNNAVSLNSLNKSGSLTMTDSVQMVGSSSDLSSNCLSQLLLPPNGNNGMRSSGQTRDFLGVGGGGEAPRPPFLPPELAKFATINSTMGLSQFAANH 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44810321 44812463 - Lag0027070.1 Lac10g3025 585556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3025 492 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 461 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac10g3025 492 FunFam protein indeterminate-domain 12-like 46 115 - -
Lac10g3025 492 FunFam protein indeterminate-domain 5, chloroplastic-like 122 201 - -
Lac10g3025 492 SUPERFAMILY beta-beta-alpha zinc fingers 66 164 IPR036236 -
Lac10g3025 492 Gene3D Classic Zinc Finger 119 201 - -
Lac10g3025 492 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 170 209 - -
Lac10g3025 492 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 105 139 - -
Lac10g3025 492 MobiDBLite consensus disorder prediction 1 51 - -
Lac10g3025 492 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 143 167 - -
Lac10g3025 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Lac10g3025 492 Pfam Zinc finger, C2H2 type 67 89 IPR013087 -
Lac10g3025 492 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Lac10g3025 492 SMART c2h2final6 109 139 IPR013087 -
Lac10g3025 492 SMART c2h2final6 144 164 IPR013087 -
Lac10g3025 492 SMART c2h2final6 67 89 IPR013087 -
Lac10g3025 492 MobiDBLite consensus disorder prediction 1 23 - -
Lac10g3025 492 Gene3D Classic Zinc Finger 46 118 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3025 Lac-Chr10:44810321 Lac12g2443 Lac-Chr12:41534019 7.30E-89 dispersed
Lac8g2196 Lac-Chr8:40265888 Lac10g3025 Lac-Chr10:44810321 3.70E-59 transposed
Lac1g2114 Lac-Chr1:42624689 Lac10g3025 Lac-Chr10:44810321 2.60E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22849 PF12171 zf-C2H2_jaz 7.20E-05 CL0361 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3025 K25870 - csv:101213422 745.732