Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3026 ATGAGCGTGATTGACCTGTTGACCAGAGTAGATGCGATCTGCCAGAAGTACGACAAATACGATGTAGAGAAGCAGAGGGATCTCAATGTCTCCGGCGATGATGCCTTTGCTCGACTCTATGCCACCGTCGAAGCCGACATTGAAGCCGCTCTTCAGAAAGCGGATGATGCTTCTAAAGAGAAGAATAGGGCGTCGGTGGTGGCGTTGAATGCGGAGATTCGTCGTACCAAGGCTCGATTACTGGAGGAGGTCCCCAAGTTGCAGAGATTGGCTGTAAAGAGGGTAAAAGGACTATCAACTGAAGATCTTACCACTCGAAATGATTTGGTGCTTGCATTGCCGGATCGGATTCAAGCTATACCAGATGGGACTGCTACTGCAGCGAAGAAGAATGGTGGTTGGACATCCTCAGCTTCACGTACTGAAATAAAATTTGACTCAGATGGGCGATTTGATGATGAGTACTTCCAACACACTGAGGAGTCAAGTCAGTTCAGGCAAGAGTATGAAATGCGGAAAATGAAACAGGATCAAGGATTGGACATGATATCCGAAGGGTTGGATACTCTGAAGAACATGGCTCATGACATGAATGAGGAAATAGACAGGCAAGTTCCTTTGATGGACGAGATTGACACTAAGGTGGACAAAGCTGCATCTGACCTTAAAAACACCAATGTTAGATTAAAGGACACAGTTAACCAGCTAAGGTCCAGCAGAAATTTCTGTATTGATATTGTTTTGTTGTGTATAATCTTGGGTATTGCTGCCTATCTATACAAGTGGTGCTTTAGGCAAGTGCAACTGAACTCTATTATGGAATGTGGGAAGTGTATGGTAGCATTAAGAGTTCATGAGTCAGATCCTACCTAG 873 44.79 MSVIDLLTRVDAICQKYDKYDVEKQRDLNVSGDDAFARLYATVEADIEAALQKADDASKEKNRASVVALNAEIRRTKARLLEEVPKLQRLAVKRVKGLSTEDLTTRNDLVLALPDRIQAIPDGTATAAKKNGGWTSSASRTEIKFDSDGRFDDEYFQHTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNVRLKDTVNQLRSSRNFCIDIVLLCIILGIAAYLYKWCFRQVQLNSIMECGKCMVALRVHESDPT 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44824372 44826782 - Lag0027071.1 Lac10g3026 585557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3026 290 CDD SNARE_Qc 175 230 - -
Lac10g3026 290 Pfam SNARE domain 207 256 IPR000727 -
Lac10g3026 290 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Lac10g3026 290 FunFam Putative syntaxin-71-like 170 231 - -
Lac10g3026 290 Coils Coil 219 239 - -
Lac10g3026 290 Coils Coil 40 60 - -
Lac10g3026 290 SMART tSNARE_6 165 232 IPR000727 -
Lac10g3026 290 Gene3D - 170 231 - -
Lac10g3026 290 PANTHER SYNTAXIN 44 250 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Lac10g3026 290 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Lac10g3026 290 SUPERFAMILY SNARE fusion complex 163 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1934 Lac-Chr1:40992214 Lac10g3026 Lac-Chr10:44824372 1.90E-33 transposed
Lac10g3026 Lac-Chr10:44824372 Lac9g2572 Lac-Chr9:44322461 1.40E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3026 K08506 - csv:101215905 496.893