Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3028 ATGGCGGCCGCGAATCATTTCAGCTTTCTTCTTCTTCTTCTTTTTCTTTTGCAGATCTTTTATTCAGGAAGGAGTGAACTGCAAATGAATTATTATTCGAAAAGTTGCCCAAAAGCTGAAGAAATTATAAAACAGCAAGTTACTGATCTCTACTATGAACATGGAAACACTGCCGTTTCGTGGCTCAGAAACCTCTTCCATGACTGCGTTGTTAAGTCTTGTGATGCATCTCTACTATTGGAGACGGTGGTGGGAGTGGAATCAGAGAAAGATTCAGACAGAAGCTTTGGAATGAGGAATTTCAAATATGTAAATAAGATCAAAGCCGCCGTTGAAAGTGAATGTCCTCTCACTGTTTCTTGCGCCGATATTGTTGCCCTTTCCGCTAGAGATGGCATAGTCATGTTGAAAGGACCTCATATAGAGATGAAAACAGGGAGAAGAGATAGCAAAATGAGCTATTCACATCTTGTTGAAGAGTTGGTTCCAAGTCACAATGAATCTCTTATAAATGTTCTCTCCAGGTTTAAGTCCATTGGCATTGATACTGAAGCAACTGTTGCTCTTCTAGGAGCTCACTCGGTAGGTCGAGTCCATTGCGTCAACCTAGTGGAGAGACTCTACCCAACGGCCGATCCAACCATCGATCCAGAATACGCCAAATACCTAAAACTCAGATGCCCAACACCAAATCCCGACCCAACCGCAGTATTATACTCGAGAAACGACCGCGAGACACCGATGATTCTTGACAACATGTACTACAGCAATGTGCTGAAACACAAGGGCTTGCTGATTGTGGACCAAGAATTGGTCTCTAATCCTGTCACTCTTCCATATGTGAAGAAATTTGCTGCTGACATTCAGTATTTTCATGCCCAATTTTCCAGGGGAATTCGTTTGTTGTCGGAGAATAATCCACTCATTGGAGATCAAGGCGAGATTAGAAAAGATTGTCGCTTTGTTAATTAA 972 42.18 MAAANHFSFLLLLLFLLQIFYSGRSELQMNYYSKSCPKAEEIIKQQVTDLYYEHGNTAVSWLRNLFHDCVVKSCDASLLLETVVGVESEKDSDRSFGMRNFKYVNKIKAAVESECPLTVSCADIVALSARDGIVMLKGPHIEMKTGRRDSKMSYSHLVEELVPSHNESLINVLSRFKSIGIDTEATVALLGAHSVGRVHCVNLVERLYPTADPTIDPEYAKYLKLRCPTPNPDPTAVLYSRNDRETPMILDNMYYSNVLKHKGLLIVDQELVSNPVTLPYVKKFAADIQYFHAQFSRGIRLLSENNPLIGDQGEIRKDCRFVN 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44846354 44850596 + Lag0027073.1 Lac10g3028 585559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3028 323 Pfam Peroxidase 44 287 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g3028 323 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g3028 323 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g3028 323 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g3028 323 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g3028 323 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g3028 323 Gene3D - 30 323 - -
Lac10g3028 323 ProSiteProfiles Plant heme peroxidase family profile. 26 323 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g3028 323 SUPERFAMILY Heme-dependent peroxidases 26 323 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g3028 323 FunFam Peroxidase 30 175 - -
Lac10g3028 323 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g3028 323 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g3028 323 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g3028 323 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g3028 323 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g3028 323 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g3028 323 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g3028 323 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g3028 323 PANTHER - 12 323 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g3028 323 FunFam Peroxidase 163 302 - -
Lac10g3028 323 CDD secretory_peroxidase 26 322 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac10g3028 323 Gene3D Peroxidase, domain 2 163 302 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0687 Lac-Chr10:5289913 Lac10g3028 Lac-Chr10:44846354 1.20E-103 dispersed
Lac10g3028 Lac-Chr10:44846354 Lac1g2959 Lac-Chr1:50399663 7.80E-55 dispersed
Lac1g2113 Lac-Chr1:42602555 Lac10g3028 Lac-Chr10:44846354 1.20E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3028 K00430 - csv:101215428 578.556