Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3029 ATGTTGAATTTCTCTCCATTTTCCTCGTCAATTACCTTCACATTACTTCTCTTTTCCTTTTCCAGTGCTGCCATTTTCGATTCCGCCGCTGTGGCCGCCGCCACCGACTTCGACTTCGGCACCGTCGCTCTCAGTAGCTTAAAGCTCATCGGCGATGCCCATTTGAACAACGGCAGCGTCAGGCTGACGCGCGACCTCGCCGTCCCCAACTCCGGCGCCGGCAGAGTCCTCTACGCCAAACCCATCAGGTTCCGGCAGCCGGGATTTAATTACCTCGCCAGTTTCTCGACATTTTTCTCCTTCTCCATCACGAATCTCAACCCGTCCTCGATCGGCGGCGGTTTGGCGTTTGTGATCTCGCCGGACGCCGATACGCTCGGCGGCGCCGGTGGGTTCTTGGGTTTGGCCGACGAGAGGGGATTGGGATTCGTGGCGGTGGAGTTCGACACGTTGATGGATGTGGAATTTAAGGACATTAATGGGAACCATGTCGGATTGGATCTGAACGAGATGGTTTCGTTGCAGGTTAAAGATCTGGATGGAATTGGAATCGATCTCAAAAGCGGCGATACGGTGAATTCTTGGATCGAATACGACGGGTCGTCTCGGATCTTCAAAATCTTTGTTTCGTATTCGAATTTGAAACCGATAGAACCTTTATTGTCGTTCAATCTCGATCTCGACCCGTATCTGAACGATTTTATGTACGTCGGATTTTCCGGTTCGACGCAGGGGAGTACGGAAGTTCACAGTGTGGACTGGTGGAGCTTTACGTCGTCGTTTGACTCAAATTCTCCACCCGGGTCAGTTCCGCCGCCACCGCCGACGACGACGCTGATGAACCCAACGGCGAATGTCGTCCGGTCACCGCCCCCATCGCAGCCGCCGTCGGGGTCAGGTTCCGTCACACAGAAGGACGCCAAGTCGCCGTCCTGCCACAATGGACTCTGCAAGCAAGGCGCCGGCGCGGTGGTCGGAGTAGTGACGGCGGGGGCGTTTGTTCTAGCATTATTCGCCGGTGGGTTAATTTGGGTATATTCCAAAAAGATCAAACGGGTCAAAAAATCAGACTCACTGGCTTCAGAAATCATCAAAATGCCTAAGGAATTCACTTATAAAGAGCTCAAAATCGCCACCAAATGCTTCAATTCGAACAGAATCATCGGCCATGGCGCTTTTGGGACTGTTTATAAAGGAATCCTGCCGGAGACCGGCGACATTGTGGCGGTGAAACGGTGTAGCCATAGCACACAAGGGAAGAACGAATTTCTCTCTGAACTTTCGATCATCGGAACTCTCCGCCACCGGAATTTGGTCCGTCTTCAAGGGTGGTGTCACGAGAAGGGCGAGATTTTACTCGTTTACGATTTAATGCCAAATGGGAGTTTAGATAAAGCACTTTTCGAGGCCAGAACGCCGCTGCCGTGGCCTCACCGGAGAAAAATCCTCCTCGGAGTCGCGTCGGCGTTGGCCTATTTGCATCAAGAATGTGAAAATCAGGTCATTCACAGAGACGTTAAAACCAGTAACATAATGTTGGATGAAGGATTCAACGCCCGATTAGGCGATTTCGGGTTGGCCCGACAAGTGGAGCACGATAAATCGCCGGACGCCACCGTCGCCGCGGGCACAATGGGGTATTTAGCGCCGGAATATCTCCTCACCGGGCGAGCGACGGAAAAAACCGACGTGTTCAGCTTCGGCGCCGTCGTGCTCGAAGTCGCCAGCGGAAGACGGCCGATCGAGAAAGATACCTCGAACGCCGCCGCTGGCGGCGGCGGAAAATTCGGTGTGAACAGTAATTTGGTGGACTGGGTATGGAGTTTACACCGGGAAGGGCGGTTGTTGACGGCGGCCGATGAGAGACTCGGCGGCGAGTTTGAGGAATCGGAGATGAGGAAAGTTTTGTTAGTCGGGTTGGCTTGTTCGCACCCGGATCCGATGACCCGGCCCACGATGAGAGGCGTAGTGCAAATGTTAATCGGCGATTCGGAGATTCCGATCGTCCCTCGGTCTAAGCCGTCGACGAGCTTCAGCACCGCTCATTTGCTTCTCACTTTACAAGACAGCGTGTCCGATCTCAACGGCATGATCGCCATTTCCACTTCCTCGTCCGAGCACAGCTTCAAGGGCGAGGATTTGATCTCGCTGGACGATCGGACGGCGGGAAATCCATCCATCGTTTGA 2187 53.68 MLNFSPFSSSITFTLLLFSFSSAAIFDSAAVAAATDFDFGTVALSSLKLIGDAHLNNGSVRLTRDLAVPNSGAGRVLYAKPIRFRQPGFNYLASFSTFFSFSITNLNPSSIGGGLAFVISPDADTLGGAGGFLGLADERGLGFVAVEFDTLMDVEFKDINGNHVGLDLNEMVSLQVKDLDGIGIDLKSGDTVNSWIEYDGSSRIFKIFVSYSNLKPIEPLLSFNLDLDPYLNDFMYVGFSGSTQGSTEVHSVDWWSFTSSFDSNSPPGSVPPPPPTTTLMNPTANVVRSPPPSQPPSGSGSVTQKDAKSPSCHNGLCKQGAGAVVGVVTAGAFVLALFAGGLIWVYSKKIKRVKKSDSLASEIIKMPKEFTYKELKIATKCFNSNRIIGHGAFGTVYKGILPETGDIVAVKRCSHSTQGKNEFLSELSIIGTLRHRNLVRLQGWCHEKGEILLVYDLMPNGSLDKALFEARTPLPWPHRRKILLGVASALAYLHQECENQVIHRDVKTSNIMLDEGFNARLGDFGLARQVEHDKSPDATVAAGTMGYLAPEYLLTGRATEKTDVFSFGAVVLEVASGRRPIEKDTSNAAAGGGGKFGVNSNLVDWVWSLHREGRLLTAADERLGGEFEESEMRKVLLVGLACSHPDPMTRPTMRGVVQMLIGDSEIPIVPRSKPSTSFSTAHLLLTLQDSVSDLNGMIAISTSSSEHSFKGEDLISLDDRTAGNPSIV 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44857732 44859918 + Lag0027074.1 Lac10g3029 585560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3029 728 Gene3D - 33 268 - -
Lac10g3029 728 FunFam L-type lectin-domain containing receptor kinase VIII.1 346 457 - -
Lac10g3029 728 Gene3D Transferase(Phosphotransferase) domain 1 458 681 - -
Lac10g3029 728 SUPERFAMILY Protein kinase-like (PK-like) 364 689 IPR011009 -
Lac10g3029 728 CDD lectin_legume_LecRK_Arcelin_ConA 35 261 IPR001220 GO:0030246(InterPro)
Lac10g3029 728 FunFam L-type lectin-domain containing receptor kinase VIII.1 33 270 - -
Lac10g3029 728 MobiDBLite consensus disorder prediction 261 307 - -
Lac10g3029 728 ProSitePatterns Legume lectins beta-chain signature. 144 150 IPR019825 -
Lac10g3029 728 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 276 IPR013320 -
Lac10g3029 728 Gene3D Phosphorylase Kinase; domain 1 344 457 - -
Lac10g3029 728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 501 513 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g3029 728 ProSiteProfiles Protein kinase domain profile. 382 669 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3029 728 SMART serkin_6 382 660 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3029 728 Pfam Protein kinase domain 383 658 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3029 728 PANTHER - 39 675 IPR050528 GO:0002229(PANTHER)|GO:0005886(PANTHER)
Lac10g3029 728 Pfam Legume lectin domain 37 264 IPR001220 GO:0030246(InterPro)
Lac10g3029 728 CDD STKc_IRAK 388 660 - -
Lac10g3029 728 FunFam L-type lectin-domain containing receptor kinase VIII.1 458 678 - -
Lac10g3029 728 ProSitePatterns Protein kinases ATP-binding region signature. 388 411 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3029 Lac-Chr10:44857732 Lac5g1851 Lac-Chr5:36725821 1.70E-113 dispersed
Lac10g3029 Lac-Chr10:44857732 Lac8g1415 Lac-Chr8:30899266 9.90E-167 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85698 PF00069 Pkinase 1.20E-50 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3029 - - - 0.0