Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3047 ATGGAGCAAGCTTTTTTAGAGTTCGACATAGCTGGAGATATCTTGGATTTGTACTTCCCTCGAACTGTCTTCACTGTCGAAAATGAATGGCTTAAGCTCATTTCTCAGCTCATTTTCTTCTTTTCTTCTCCGGCAGGTGGACGTCTCGCTTCACAGGCTATCGATGATGGTCGTGGCATCTTTATTTTGTCAATTGACTTTCAACAGTTCCGGAAGATTTGCGAGCAACATGAATTTTACCTAATGCTAGAGGAAAATCCTAAAGTTGCTCTCAAATGTATGAGTGCTGCACTTCACCAGGTAATGAGGGCCAAATGGGCGCACAATTTAGACGATGTCGCAAAAATTCTAGTCCGGTTGCACAACTATTCAGAATCTATGCTTGCTTTGAAGAACTTGAAGGCAGCATATATTGACAAGCTTGTATCAGTGCGTGGTACAGTTGTTAAAGTTAGCACTGTCAAACCTTTGGTGGTGCAAATGAGTTTTGATTGCGCAAAGTGTAAAAGCAATATTACACGCATCTTTCCTGATGGTAAGTTTTCACCTCCATCGTTTTGTGAGTTGGATGGGTGTAAAAGCAAAACATTCAATCCCATTCGATCTACCGCTGAAGCAATCGACTTTCAAAAAATACGGTTGCAAGAGCTCACTAAATCTGATGACCATGAAGAAGGCAGGGTGCCTCGAACTGTAGAATGTGAACTGAGTGAAGATCTTGTTGACGCATGCATCCCTGGAGATGTTGTCACTGTTACTGGAATCATAAAAGTAATTAATAATTACATGGATATTGGAGGAGGAAAATCGAAGAGCAAAAATCAAGGATTTTACTATTTGTATCTGGAAGCTGTTTCAATAAAAAACTCTAAGTCACAATCTACACCTGAAGAGTTGCAAGATTCTAACTCTAACGTAAGAGCAACCGAGTTGCTTGATTTATTCTCATTCTCCCCAAGAGATTTGGAATTTATTGTGAAATTCTCTGGGGAAAATGGTTCAGATGTCTTCCGTCAAATACTTCAATCTATATGTCCATCCATCTACGGACATGAACTTGTTAAAGCGGGAATAACACTAGCACTATTTGGTGGTGTACGAAAGCATTCAAAAGACCAGAATAAAGTTCCTGTTAGAGGAGATATTCATGTCATAGTTGTTGGCGATCCTGGACTAGGCAAAAGTCAAATACTGCAAGCGGCTGCAGCTGTTTCTCCACGTGGCATTTATGTTTGTGGTAATGCAACAACCAAGGCAGGCCTAACTGTAGCTGTTGTGAGGGATTCCATGACGAATGACTATGCTTTTGAGGCCGGGGCTATGGTACTTGCTGATGGTGGATTATGCTGTATAGATGAGTTCGATAAAATGTCTGCTGAACATCAGGCCCTACTAGAAGCCATGGAACAACAATGTGTATCTATTGCAAAAGCTGGACTGGTAGCAAGTCTATCAGCACGCACGTCTGTTTTAGCTGCAGCTAACCCTGTTGGTGGTCATTACAACCGGGCAAAAACTGTGAATGAAAACTTGAAGATGAGCGCCGCTCTTCTCTCGAGATTTGACTTAGTTTTTATATTGCTGGATAAACCTGACGAATTTCTAGATAAGAGAGTCTCGGAGCACATCATGTCGCTTCATGCTGGATATGGGGAACGCGCCTCTGCAGCAAAAAGACTACGTAAAGATATATCTCCGTTGGCTTTAAAGAATGGGGAAATGGAGAATGATGGAAAAGGAGATGCTTGTTCAAGACGCGAATCTTTAGTTTCAAGACTGAGATTGGATCGAGCGAAAGATGGTGATTTTGTACCATTACCTGGCCAGCTTCTTCGCAAATATATAGCCTATGCAAGAACTTTTGTGTTCCCCAGGATGTCAAAGCCAGCAGCAGACATCTTGCAGAAATTTTACTTACGACTGCGTGACCAGAATACATCAGCGGATGGTACACCAATTACAGCAAGGCAACTGGAAAGTCTGGTGAGGCTGGCAGAAGCTCGAGCACGGGTAGACCTCAGGGAAGAAATAACAGTCCAAGATGCCATGGATGTGGTAGAAATAATGAAGGAATCCCTTTATGACAAGTATGTAGATGAACATGGTGTTCTTGATTTTGGTCGAAGTGGGGGAATGAGTCAACAGAAAGAAGCCAAGCGATTTTTGAGTGCACTAAACAAACAATCAGAGTTGCAGCAGAAAGATTGTTTCTCTATCTCGGAAATATATAGCTTGGCAGATAGGATTGGCCTACGAGTACCAGACATCGATACCTTCATAGAAAATCTTAACAGTGTTGGATATCTGCTCAAGAAGGGACCAAAGACATACCAGTCAATCAACGAGGTCAAGAGGATAAAACTGGACGATATTACCAGTTCTCGCAGTGTTTGTGTCTCCAGAAGCTTCTTTAGATTAATTCTTAATTCAGATACAGGTCAGACATTCAAATTAGGATGGTCACAAAGTCTTAGCGAGTCAGAGAGCTGTCCACAAGTTGGAATGCACGAAAACTAG 2517 41.88 MEQAFLEFDIAGDILDLYFPRTVFTVENEWLKLISQLIFFFSSPAGGRLASQAIDDGRGIFILSIDFQQFRKICEQHEFYLMLEENPKVALKCMSAALHQVMRAKWAHNLDDVAKILVRLHNYSESMLALKNLKAAYIDKLVSVRGTVVKVSTVKPLVVQMSFDCAKCKSNITRIFPDGKFSPPSFCELDGCKSKTFNPIRSTAEAIDFQKIRLQELTKSDDHEEGRVPRTVECELSEDLVDACIPGDVVTVTGIIKVINNYMDIGGGKSKSKNQGFYYLYLEAVSIKNSKSQSTPEELQDSNSNVRATELLDLFSFSPRDLEFIVKFSGENGSDVFRQILQSICPSIYGHELVKAGITLALFGGVRKHSKDQNKVPVRGDIHVIVVGDPGLGKSQILQAAAAVSPRGIYVCGNATTKAGLTVAVVRDSMTNDYAFEAGAMVLADGGLCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDEFLDKRVSEHIMSLHAGYGERASAAKRLRKDISPLALKNGEMENDGKGDACSRRESLVSRLRLDRAKDGDFVPLPGQLLRKYIAYARTFVFPRMSKPAADILQKFYLRLRDQNTSADGTPITARQLESLVRLAEARARVDLREEITVQDAMDVVEIMKESLYDKYVDEHGVLDFGRSGGMSQQKEAKRFLSALNKQSELQQKDCFSISEIYSLADRIGLRVPDIDTFIENLNSVGYLLKKGPKTYQSINEVKRIKLDDITSSRSVCVSRSFFRLILNSDTGQTFKLGWSQSLSESESCPQVGMHEN 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44966707 44973734 + Lag0027092.1 Lac10g3047 585578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3047 838 Pfam MCM P-loop domain 333 547 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac10g3047 838 SUPERFAMILY Nucleic acid-binding proteins 59 260 IPR012340 -
Lac10g3047 838 Gene3D - 314 702 IPR027417 -
Lac10g3047 838 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 699 IPR027417 -
Lac10g3047 838 ProSiteProfiles MCM family domain profile. 336 543 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac10g3047 838 FunFam DNA helicase MCM8 isoform X1 157 208 - -
Lac10g3047 838 Gene3D - 130 260 IPR012340 -
Lac10g3047 838 Pfam MCM AAA-lid domain 610 693 IPR041562 -
Lac10g3047 838 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 62 777 IPR031327 GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)
Lac10g3047 838 SMART mcm 126 694 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac10g3047 838 CDD MCM8 340 692 - -
Lac10g3047 838 Coils Coil 451 471 - -
Lac10g3047 838 Pfam MCM OB domain 130 259 IPR033762 -
Lac10g3047 838 CDD MCM8_WHD 715 778 - -
Lac10g3047 838 Gene3D - 157 207 - -
Lac10g3047 838 PRINTS Mini-chromosome maintenance (MCM) protein family signature 490 502 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac10g3047 838 PRINTS Mini-chromosome maintenance (MCM) protein family signature 517 525 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac10g3047 838 PRINTS Mini-chromosome maintenance (MCM) protein family signature 439 453 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac10g3047 838 PRINTS Mini-chromosome maintenance (MCM) protein family signature 379 394 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac10g3047 838 PRINTS Mini-chromosome maintenance (MCM) protein family signature 466 479 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac10g3047 838 SMART AAA_5 380 532 IPR003593 GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3047 Lac-Chr10:44966707 Lac4g1433 Lac-Chr4:32762103 6.40E-77 dispersed
Lac10g3047 Lac-Chr10:44966707 Lac7g1551 Lac-Chr7:17284273 7.60E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3047 K10737 - csv:101211972 1439.48