Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g3050 | ATGGCTTTTTCCCATTTTCTCGCTCTCCATCTTCCATTTTCGCTTCTGGGTTCTTCTCCAGCTTCCGTTTCCGGTCCTATTCATGGGGTTTTGCCGAGGATGGCCGATGCTCCGACGAGCCCCGGCGGAGGAAGCCATGAGAGCGGCGAGCAGAGTCCGCGGTCTAATGTTCGGGAACAGGATAGGTTCCTTCCGATTGCCAATATTAGCAGGATCATGAAGAAGGCTCTTCCGGCTAATGGGAAGATTGCCAAGGATGCTAAGGAGACCGTACAGGAATGTGTGTCGGAGTTCATCAGTTTTATTACCAGCGAGGCTAGTGATAAATGCCAAAGAGAAAAACGGAAGACGATTAATGGAGATGATTTGCTTTGGGCTATGGCTACTCTTGGATTTGAGGATTATATCGATCCGCTTAAAACCTACTTGACGAAATACAGAGAGGGCGACACTAAGGGGTCTGCCAAAGGTGGGGATGCGTCAGCTAAGAAAGAAGCTCATCCAACCTCTGGTGCTCAGATTGCTCATCAAGGGTCGTTTTCCCAAGGAGTTAATTATGCAAGTTCTCAATCACAAGCCCAGCATCTGATGGTTCCTATGCAAGGCACCGACTAA | 615 | 48.94 | MAFSHFLALHLPFSLLGSSPASVSGPIHGVLPRMADAPTSPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKGSAKGGDASAKKEAHPTSGAQIAHQGSFSQGVNYASSQSQAQHLMVPMQGTD | 204 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 44991937 | 44995016 | - | Lag0027095.1 | Lac10g3050 | 585581 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g3050 | 204 | SUPERFAMILY | Histone-fold | 60 | 159 | IPR009072 | GO:0046982(InterPro) | |
Lac10g3050 | 204 | FunFam | Nuclear transcription factor Y subunit B-3 | 52 | 177 | - | - | |
Lac10g3050 | 204 | PRINTS | CCAAT-binding transcription factor subunit A signature | 91 | 109 | - | - | |
Lac10g3050 | 204 | PRINTS | CCAAT-binding transcription factor subunit A signature | 110 | 128 | - | - | |
Lac10g3050 | 204 | PRINTS | CCAAT-binding transcription factor subunit A signature | 129 | 147 | - | - | |
Lac10g3050 | 204 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 46 | 190 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro) | |
Lac10g3050 | 204 | MobiDBLite | consensus disorder prediction | 150 | 178 | - | - | |
Lac10g3050 | 204 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 94 | 110 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac10g3050 | 204 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 63 | 127 | IPR003958 | - | |
Lac10g3050 | 204 | Gene3D | Histone, subunit A | 50 | 195 | IPR009072 | GO:0046982(InterPro) | |
Lac10g3050 | 204 | MobiDBLite | consensus disorder prediction | 27 | 60 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g3050 | Lac-Chr10:44991937 | Lac9g1948 | Lac-Chr9:39267621 | 4.60E-45 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22852 | PF00808 | CBFD_NFYB_HMF | 1.10E-27 | CL0012 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g3050 | K08065 | - | csv:101212699 | 332.413 |