Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3050 ATGGCTTTTTCCCATTTTCTCGCTCTCCATCTTCCATTTTCGCTTCTGGGTTCTTCTCCAGCTTCCGTTTCCGGTCCTATTCATGGGGTTTTGCCGAGGATGGCCGATGCTCCGACGAGCCCCGGCGGAGGAAGCCATGAGAGCGGCGAGCAGAGTCCGCGGTCTAATGTTCGGGAACAGGATAGGTTCCTTCCGATTGCCAATATTAGCAGGATCATGAAGAAGGCTCTTCCGGCTAATGGGAAGATTGCCAAGGATGCTAAGGAGACCGTACAGGAATGTGTGTCGGAGTTCATCAGTTTTATTACCAGCGAGGCTAGTGATAAATGCCAAAGAGAAAAACGGAAGACGATTAATGGAGATGATTTGCTTTGGGCTATGGCTACTCTTGGATTTGAGGATTATATCGATCCGCTTAAAACCTACTTGACGAAATACAGAGAGGGCGACACTAAGGGGTCTGCCAAAGGTGGGGATGCGTCAGCTAAGAAAGAAGCTCATCCAACCTCTGGTGCTCAGATTGCTCATCAAGGGTCGTTTTCCCAAGGAGTTAATTATGCAAGTTCTCAATCACAAGCCCAGCATCTGATGGTTCCTATGCAAGGCACCGACTAA 615 48.94 MAFSHFLALHLPFSLLGSSPASVSGPIHGVLPRMADAPTSPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKGSAKGGDASAKKEAHPTSGAQIAHQGSFSQGVNYASSQSQAQHLMVPMQGTD 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44991937 44995016 - Lag0027095.1 Lac10g3050 585581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3050 204 SUPERFAMILY Histone-fold 60 159 IPR009072 GO:0046982(InterPro)
Lac10g3050 204 FunFam Nuclear transcription factor Y subunit B-3 52 177 - -
Lac10g3050 204 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Lac10g3050 204 PRINTS CCAAT-binding transcription factor subunit A signature 110 128 - -
Lac10g3050 204 PRINTS CCAAT-binding transcription factor subunit A signature 129 147 - -
Lac10g3050 204 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 46 190 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Lac10g3050 204 MobiDBLite consensus disorder prediction 150 178 - -
Lac10g3050 204 ProSitePatterns NF-YB/HAP3 subunit signature. 94 110 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g3050 204 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 63 127 IPR003958 -
Lac10g3050 204 Gene3D Histone, subunit A 50 195 IPR009072 GO:0046982(InterPro)
Lac10g3050 204 MobiDBLite consensus disorder prediction 27 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3050 Lac-Chr10:44991937 Lac9g1948 Lac-Chr9:39267621 4.60E-45 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22852 PF00808 CBFD_NFYB_HMF 1.10E-27 CL0012 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3050 K08065 - csv:101212699 332.413