Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3051 ATGTCTTTGCTGCAAGCACCGGTAAAGGCTAATTGTTCAGTTTTTTGGCGAGGCTTTGTTTGGGCAAGAGAGCTTGTGCAAAGTGGAATTCGAAAACGTATTGGAGATGGTAACTCTACGCTTTTCTTTCGAGATCCATGGATTCCGAAGGAATCTACTTTTAGGCCATTGCCAATTTCTGGAATAGAGCATATTGAAAACACGTTAGTCTCTGAATTTATAACCCCGACGCTAGGATGGGATGTGAATAAATTGAGGGGTCTAGTGCATCCTGAGGATGTTAAGCTAATCATGTATCTTCCAATTAGTTCATCCCTCGAGGAAGATCAGTGGATTTGGCACTATTGTCCAAATGGAATGTACTCAGTTCGAAGTGGGTATAAACTTGCTAGACTCACGACGATTGACCATGAATATACTAGTTCTAGTGTTCAGCAAGGGTGGTGGCAAACGCTATGGAAATTAAAGATTCCGCAAAAGATTAAGCTTTTTATTTGGAAAGCTTTCCATGGATGTTTGCCAACTTTTTACGGCCTTTGGAGGCGAGGTGTAGATGTCTCACCAATGTGTCCAATTTGCAGGTCCAAATGGGAGACTGTTGATCACGCTCTATGCGGGTGTAAAAGATCGAAGAGAATTTGTGACATAATGTTTCAACGTGTGGATTCTAACATTCCGCTGGAGCGTGAGAATAATGCTTTTCAAGATCATACTGTGCAATTATTTACAGATTGTGTTGTTTGGGCGCATGTAGAATGGACTGGTCATGTACCTAGAGAAGGCAATATGAGGGCTGATACTCTTGTGAAGAATGCTTTAGCTCAGCGTAAGTCTATGCTTTGGTTAGGTACTGCCTCACTGGAGCATGCTTTTGGGAGTGGTTGTCTAAGTGTCATTGTAATCGTCCTTGTTCTTCTTTTGTATCCTACCTTTTCGTTGGGTCCCACGCATCCCGATCCCATAAAAAACAAAAGTTTATTCTTCACGCTCGGAGAAATGGGGACTAAACTTCTGCTTCTGTTTCTTTTCTTTCTTTTGGATGTCTCTTTTGCTCAGATGCCAGGTTTTGTAAGTTTGGACTGTGGAGGTCAAGAAAGTTTCACTGATGATATTGGTCTGGAGTGGATTCCAGATACTCAAGTTCGTTTTGGAGAAGCAATTAACATTTCTGTTGCAAATGAGACAAGGAAGCAATACATGACCTTAAGACATTTCCCTGCTGATTCCAGGAAGTACTGTTACTCACTTAATGTCACTAGTAGAACACGTTACCTTCTCAGAGCAACATTTTTATACGGTAACTTTGACAATAACAATGTGTATCCAAAATTTGACATTTCCCTTGGGGCAACTCACTGGTCAACAATTGTCATATCTGACGCCAACACCATAGAGGTTCGAGAGCTCATATTTTTGGCTTCAACTCCTACCGTGAGTGTTTGTTTGTCAAATGCTACAACTGGGCAGCCATTCATATCCACACTTGAGCTTCGACAATTTAATGGCTCTATCTACTATACTGAATTTGAGGATCAGTTTTACCTGAGTGTCTCAGCAAGGATAAATTTTGGAGCCGATTCCAAAGCACCAGTAAGGTATCCTGATGATCCATTTGACCGAATATGGGAGTCGGACTCTGTGAGAAAAGCAAATTACCTTGTTGATGTTGCTGCTGGTACCGAAAAAGTTTCCACTAAAATACCAATAGATGTAGATAGGGACGAAAGACCACCTCAAAAAGTTATGCAGACTGCTGTAGTTGGCAGAAATGGTTCATTAACTTACCGGTTAAATTTGGATGGTTTTCCTGGCTTTGGATGGGCGGTCACCTACTTTGCAGAAATTGAAGACTTGAGTCCAACCGATACAAGAAAATTCAGGCTTGTACTTCCTGGTATGCCTGAAATCAGCAAAGCTGTAGTCAATATTGAAGAAAATGCTCAAGGACAATATCGACTTTATGAGCCTGGTTTTACCAACATAACCTTCCCTTTTGTATTATCTTTTCGGTTTGGGAAAACGTCAGATTCTTCATTGGGACCTCTGTTAAATGCTATGGAGATTAACAAGTATCTTGAAAAAAGTGATGGTTCAGTAGATGAGGCAATTGTTGCTAGTGTAATTTCAAAATTCTCATCTTCAGATTGGGATGAAGGTGGTGATCCATGCATGCCAGTTCCTTGGTCATGGTTGCAATGTAACTCTGATCCACGGCCAAGAATAGTTAAAATTTCATTGTCCAAAAAGAATTTGACGGGGAACATCCCTACAGACCTTGCAAAATTGAGCGGCTTAGTTGAATTGTGGCTTGATGGAAATTCATTCGTTGGTCCTATACCTGATTTTACTGGATGCGTGGACTTGAAAATCCTCCATCTTGAGAACAACCAGTTGACTGGAGAGTTGCCTTCCTCTTTAGTAAATCTACCAAGTTTGCGGGAGCTGTATGTGCAGAATAACATGTTATCTGGAACAGTGCCTTCCGGTCTTCTCAATAAAAACTTAGTTTTAAACTACTTTGGAAACATTAATCTTCATGAAGGGGGAAAAAAGAACCACATTTACATTATTGTGGGTTCAGTAATTGGTGCTGTTGTCCTGCTGTTGGCTACTGTGGTGTCTTGCTACTTTTTGCAAAGAGGAAGAAAGAAATATCGGGAACAAGATCTACTTGAAGAATCCATGTCTGTACAAAGATTAGCCTCTGCAAAGGGGGAAGCCCACAAGGAAACCGCACATTGCTTCAGTGCTAATGAAATTAAAGAAGCAACGAGAGGTTTTGAAAGAAAAATTGGGTCTGGAGGTTTTGGTGTTGTATACTACGGGAAATTAAATGATGGAAAAGAAATCGCAGTTAAAGTTTTGACTAGTAATTCCTTCCAGGGAAAGCGAGAATTTACAAATGAGGTGACTCTCCTTTCAAGGATTCATCACAGAAATCTCGTACAATTTCTTGGATATTGTCAAGAAGAAGAAAAAAGTATGCTTGTCTATGAGTTCATGCATAATGGAACTCTCAAAGAACATCTTTATGGTCCACTAACACGTGGAGAAACGATCAGTTGGATAAAGCGCCTTGAGATTGCTGAAGATGCTGCTAGAGGGATTGAATACCTTCATACAGGCTGTATACCAGCAATTATTCATAGGGACTTGAAAAGCAGTAATATTCTTCTTGATAGGCACATGAGAGCAAAAGTTTCAGATTTTGGTCTTTCAAAACTTGCGGTGGATGGCGTCTCCCACGTGTCCAGCATAGTTCGAGGAACTGTAGGATATTTGGATCCAGAGTATTACATCTCTCAGCAGTTGACAGACAAGAGCGATGTGTATAGCTTTGGCGTTATTCTTCTCGAGTTGATATCTGGTCAAGAAGCTATATCTAGCGTTAACTTCGGTGTTCATTGCCGCAACATCGTCCAGTGGGCAAAATTACACATCGAGAGCGGTGACATTCAAGGGATCATCGATCCATCACTACGCAATGAGTATGACATTCAATCGATGTGGAAAATCGCAGAGAAAGCGTTGATGTGTGTCCAGCCACATGGGCACCTGAGGCCATCCATATCTGAAGTGCTCAAGGAGATACAGGATTCAATTTTGATTGAAAGGGAACATACTGCAATTAGAGAAGGTAACTCTGATGACATGTCTAGAAATTCAGTCCATTCTATGAATATGGGATCTCTTGATTTGTGTGGAAATGAAAACTACGTGTCGTTTGACGAATCCATTGCTCGACCTACTGCAAGGTAG 3759 40.97 MSLLQAPVKANCSVFWRGFVWARELVQSGIRKRIGDGNSTLFFRDPWIPKESTFRPLPISGIEHIENTLVSEFITPTLGWDVNKLRGLVHPEDVKLIMYLPISSSLEEDQWIWHYCPNGMYSVRSGYKLARLTTIDHEYTSSSVQQGWWQTLWKLKIPQKIKLFIWKAFHGCLPTFYGLWRRGVDVSPMCPICRSKWETVDHALCGCKRSKRICDIMFQRVDSNIPLERENNAFQDHTVQLFTDCVVWAHVEWTGHVPREGNMRADTLVKNALAQRKSMLWLGTASLEHAFGSGCLSVIVIVLVLLLYPTFSLGPTHPDPIKNKSLFFTLGEMGTKLLLLFLFFLLDVSFAQMPGFVSLDCGGQESFTDDIGLEWIPDTQVRFGEAINISVANETRKQYMTLRHFPADSRKYCYSLNVTSRTRYLLRATFLYGNFDNNNVYPKFDISLGATHWSTIVISDANTIEVRELIFLASTPTVSVCLSNATTGQPFISTLELRQFNGSIYYTEFEDQFYLSVSARINFGADSKAPVRYPDDPFDRIWESDSVRKANYLVDVAAGTEKVSTKIPIDVDRDERPPQKVMQTAVVGRNGSLTYRLNLDGFPGFGWAVTYFAEIEDLSPTDTRKFRLVLPGMPEISKAVVNIEENAQGQYRLYEPGFTNITFPFVLSFRFGKTSDSSLGPLLNAMEINKYLEKSDGSVDEAIVASVISKFSSSDWDEGGDPCMPVPWSWLQCNSDPRPRIVKISLSKKNLTGNIPTDLAKLSGLVELWLDGNSFVGPIPDFTGCVDLKILHLENNQLTGELPSSLVNLPSLRELYVQNNMLSGTVPSGLLNKNLVLNYFGNINLHEGGKKNHIYIIVGSVIGAVVLLLATVVSCYFLQRGRKKYREQDLLEESMSVQRLASAKGEAHKETAHCFSANEIKEATRGFERKIGSGGFGVVYYGKLNDGKEIAVKVLTSNSFQGKREFTNEVTLLSRIHHRNLVQFLGYCQEEEKSMLVYEFMHNGTLKEHLYGPLTRGETISWIKRLEIAEDAARGIEYLHTGCIPAIIHRDLKSSNILLDRHMRAKVSDFGLSKLAVDGVSHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISSVNFGVHCRNIVQWAKLHIESGDIQGIIDPSLRNEYDIQSMWKIAEKALMCVQPHGHLRPSISEVLKEIQDSILIEREHTAIREGNSDDMSRNSVHSMNMGSLDLCGNENYVSFDESIARPTAR 1252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45001458 45013272 - Lag0027096.1 Lac10g3051 585582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3051 1252 ProSitePatterns Protein kinases ATP-binding region signature. 931 953 IPR017441 GO:0005524(InterPro)
Lac10g3051 1252 ProSiteProfiles Protein kinase domain profile. 925 1210 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3051 1252 Pfam Leucine Rich Repeat 788 809 IPR001611 GO:0005515(InterPro)
Lac10g3051 1252 Pfam Leucine Rich Repeat 811 830 IPR001611 GO:0005515(InterPro)
Lac10g3051 1252 SUPERFAMILY L domain-like 725 832 - -
Lac10g3051 1252 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1047 1059 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g3051 1252 SUPERFAMILY Protein kinase-like (PK-like) 913 1198 IPR011009 -
Lac10g3051 1252 PANTHER OS07G0107800 PROTEIN-RELATED 785 1205 - -
Lac10g3051 1252 FunFam Leucine-rich repeat receptor-like protein kinase 903 1000 - -
Lac10g3051 1252 Pfam zinc-binding in reverse transcriptase 121 212 IPR026960 -
Lac10g3051 1252 Pfam Malectin-like domain 359 689 IPR024788 -
Lac10g3051 1252 Gene3D Phosphorylase Kinase; domain 1 897 1000 - -
Lac10g3051 1252 FunFam Leucine-rich repeat protein kinase family protein 701 851 - -
Lac10g3051 1252 Gene3D Transferase(Phosphotransferase) domain 1 1001 1220 - -
Lac10g3051 1252 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 1001 1210 - -
Lac10g3051 1252 CDD STKc_IRAK 931 1198 - -
Lac10g3051 1252 Gene3D Ribonuclease Inhibitor 703 851 IPR032675 -
Lac10g3051 1252 Pfam Protein tyrosine and serine/threonine kinase 927 1130 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g3051 1252 SMART serkin_6 925 1202 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3051 Lac-Chr10:45001458 Lac4g1387 Lac-Chr4:32128195 3.20E-133 dispersed
Lac13g0168 Lac-Chr13:1184429 Lac10g3051 Lac-Chr10:45001458 4.00E-55 dispersed
Lac5g2552 Lac-Chr5:44089817 Lac10g3051 Lac-Chr10:45001458 4.30E-52 dispersed
Lac9g2287 Lac-Chr9:42217653 Lac10g3051 Lac-Chr10:45001458 5.50E-29 dispersed
Lac10g3051 Lac-Chr10:45001458 Lac13g0098 Lac-Chr13:688584 1.80E-245 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85699 PF12819 Malectin_like 5.80E-77 CL0202 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3051 - - - 0.0