Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3053 ATGGTTTTTGCAGAAGGTGGAGCTTCAAACCCAATGCTGGATCTTAACCTCGAAGTTGTTTCCTCTGAGTCGGCCTCCGATTCCGTTGAGATGGTTACTGAGAAGTTTCTGCAGTTTCCGGCGAACAGAATGGAGAGCGCCGGGAGTTTTAACTCGTCCTCCGTCGTTAACGGCGATCCTTCCGCCAGCACCACCGGCGACGAGGACTCCTCTTCCAACGCCGACGAGGCCTTCCCGTTCACTCTCGGTAAAGATTACGCGGTTCAAGAAAGCTTAACGGCGAAATCACTCTGTATTTCCGATGACCATCGCGACCAGACGATGGAGCTCTTCCCGTTATCCGGCGGATTCTCTTGTGGTTCGAGTCCTCAGAAGCGGTGGCCGGAATATGGTTGTGGCGGCGGCGTCGCGCCGGAGCGGCGAATAATGGCGCCGCCGATGCAGCAACAGAATCAACCGATGAGAAAGAACCGGCGAGGCCCAAGGTTGCTTGAATTTGAATCCGCCATTGATGCCATTCTTGAGCACATTCTCTGTTCGTTACAGGGACTGCGGGAAACAGGTGGTTTCGATACTGCTCATGCTGCTGCTAGAGCATATGATCGAGCGGCGATCAAGTTTCGTGGGGTCGATGCAGATATCAATTTCAATGTCAGTGATTACGATGAAGATATTAAGCAGATGAGTAATTTCACCAAGGAAGAGTTTGTTCATATTCTTCGTCGCCATAGCACTGGATTTTCGAGGGGGAGCTCGAAGTACAGAGGAGTTACTCTGCATAAATGTGGGCGATGGGAAGCTCGGATGGGCCAGTTTCTGGGAAAGAAGTACATATATCTTGGTCTCTTTGACAGTGAGATTGAGGCTGCAAGGGCTTATGATAAGGCTGCCTTAAGATGCAATGGTAAGGAGGCTGTTACAAATTTTGAACCAAGTTCTTATGTGGCAGAGATGGCTTCTGAGACTGACACAGGAGAGAACAACCAGATTCTTGACCTGAACTTAGGAATTGCTCCCCCAAATCTTTCTGATGCCCAAAGTGAGAGCATTGGCATGTTTGGTAATGGTTTTCATCATGGCTCACACGACGTGCTCGTTGATAGAACAGCGTCGCTTGAGAACTCTGTTTCGGCAGCAATTGGGTCATCTCAGCCATATGGCTTTGCAGTGCCTTCTAATTACCATTCTTCTTGGAATGTTTCAAATTCCAGTTTCTTTCCCATCTCCAGGGAAAGAGCAACAGAGATGAGGATGGGGGTTGGATCCTGGGAGTGGCAAATCCATGGCCACTCAAATGGAACAGCCTCTGTGCCACTCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCATTTTCTTCTTGTTCTTCTTCTTCTTCAACTGCCATTTCTTCAGCTTCATCTGCTGTTGGTGAAATCCATTTCCCAGCTATCTTCCATCACCATGGCAACAACTTATCCAACTTCTACTGTAGAACTTGA 1479 48.82 MVFAEGGASNPMLDLNLEVVSSESASDSVEMVTEKFLQFPANRMESAGSFNSSSVVNGDPSASTTGDEDSSSNADEAFPFTLGKDYAVQESLTAKSLCISDDHRDQTMELFPLSGGFSCGSSPQKRWPEYGCGGGVAPERRIMAPPMQQQNQPMRKNRRGPRLLEFESAIDAILEHILCSLQGLRETGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMSNFTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAALRCNGKEAVTNFEPSSYVAEMASETDTGENNQILDLNLGIAPPNLSDAQSESIGMFGNGFHHGSHDVLVDRTASLENSVSAAIGSSQPYGFAVPSNYHSSWNVSNSSFFPISRERATEMRMGVGSWEWQIHGHSNGTASVPLFSAAASSGFPSFSSCSSSSSTAISSASSAVGEIHFPAIFHHHGNNLSNFYCRT 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45026310 45029340 - Lag0027098.1 Lac10g3053 585584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3053 492 PRINTS Ethylene responsive element binding protein signature 254 265 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g3053 492 PRINTS Ethylene responsive element binding protein signature 292 312 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g3053 492 SUPERFAMILY DNA-binding domain 188 219 IPR016177 GO:0003677(InterPro)
Lac10g3053 492 SMART rav1_2 253 316 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g3053 492 SMART rav1_2 182 223 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g3053 492 CDD AP2 252 312 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g3053 492 ProSiteProfiles AP2/ERF domain profile. 157 217 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g3053 492 MobiDBLite consensus disorder prediction 48 76 - -
Lac10g3053 492 ProSiteProfiles AP2/ERF domain profile. 253 310 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g3053 492 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 182 339 - -
Lac10g3053 492 Pfam AP2 domain 252 301 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g3053 492 SUPERFAMILY DNA-binding domain 252 311 IPR016177 GO:0003677(InterPro)
Lac10g3053 492 Gene3D AP2/ERF domain 180 219 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g3053 492 Gene3D AP2/ERF domain 252 311 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3053 Lac-Chr10:45026310 Lac9g1138 Lac-Chr9:26659016 3.00E-66 dispersed
Lac1g2105 Lac-Chr1:42541476 Lac10g3053 Lac-Chr10:45026310 1.60E-87 wgd
Lac10g3053 Lac-Chr10:45026310 Lac13g0882 Lac-Chr13:7202381 4.20E-44 wgd
Lac10g3053 Lac-Chr10:45026310 Lac9g2541 Lac-Chr9:44060890 8.60E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22853 PF00847 AP2 1.40E-09 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3053 K09284 - csv:101211242 702.205