Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac10g3058 | ATGGACAACAAAGCAGCAGAAAGAGTTGTTATTGCCAAACCGGTCGCTTCAAGGCCAACATGTTCCAGTTTTAAGTCATTCTCAGATATCCTTGCATGTGCCTTCAATACTTCTCCACCTAAGACATCATCTGAGACCATGGTTACTGCCATTAGGCCGAAAACAGCAAGGTTCAAGCTGAAGGATAATCCTGCTCCATCACCCAGGGCTAAAATATCAGAAACACTGCCTGGAACGACCTCTCGTAGTTCATCTGAAAATCTAACCTTATCAGACAGCAAATCCACTGTTTTATTCAAACCCTTGGCAAAACATGTATCGAAAAGGACTGTCTCTCAGCTGTCACTCATGGGGAACACTAGTTTGCAAAATCATTTACCACCGCCACCAGTCGAGGCCCATATTGAATGTCTGAACCAAGGTACAGACAATATCAAATCTGCACTGAACTCTAATCTCCCCCGGAACATCACATCTGCTGTTGAAAACAGTCAATCCATTGAAAGCTCAAGAGTGACATTGAATTATAGTAAAGAAGATCCAACTTCGCTTTGTCCTCGAATTAGTTGTGCTCAGCCTTCTTATGATGGGTATAACTGGCGGAAATATGGGCAAAAGCAAGTTAAGGGAAGCGAGTATCCACGGAGTTATTACAAGTGCACACATCCAAGTTGTCCTGTCAAAAAGAAGGTTGAGAGATCATTGGATGGGAAAATTGCTGAAATTGTTTACAAAGGTGAGCATAACCACCCAAAGCCTCAGCCTCTAAAGCATAACTCATTGGCAACACAAGGGGAAGGGTCGATATCAAATGGAACTGCACGAGATACTAATTCCGAATTATGGCTTAATTACCTCAATGGACAATTCGAAGGTTGTGAAAGTAGGTTCGAGAATCAGATCGACAAAACTTGTCAAGGAAGAGTCACACAATCCTTTGATCCGGTTGCAATTGGAGAAGTCAATACTGGATGTGGAATCTCGGATAATTCATGCGGTCTAAGTGTAGAATATGAAGAAGGAAGCAAAGTACTTGAGCCCATGGGTGATAAATTGCGAAGTAAAAGAAGGGATGGCAAAAATCCAACAAATGAAGCTGATACATCAAGTGAAGGTGTGAAAGAGCAGCACGCCATGGCTCGAGGTTCTACTGATATCGAGATTTCTGGCAAAGGCATTCGCTGGAGGAAATATGGGCAGAAAGTTGTGAAGGGAAATCTATATCCTCGAAGTTACTACAGATGTACTGGCCTCAAATGCAAAGCGCGCAAGTACGTCGAACGAGCATCCGATGATCCAGATTCCTTTATAACTACTTATGAAGGAAAACACAACCATGCCCATTTGCGGGCTACTCCTCAAGCCTTCGAGTACATATCTTCGCTTGGGCCGGTGGAGAGGCTCTACCTTGGCGTTTCATTGGTTTCTCCCAACCCAATAGGCTCTTTTTTCTCATATTGCACGCACTTTCGTGCCAGGCAAGACTGCCTTTGTTCCTTTCCTTTCTCCACAATGTACAGGAAGGTCAAGTCCAAGAAATTGAAGAAGTTGGAATCTCAGAAGAGCCAAGTTGATCCGATCAAAGCTGCTTCAGACAAACTAAAGACAAGTTCCTCCTTCAGTGAAGCCTCAAAAGGTGGGGGATCTGAGCATATCAAGGCACAGATATTTTCATTTCGGGAGTTGGCGGCCGCTACCAAAAATTTTAGGGCAGACTGTCTTTTGGGCGAGGGAGGTTTCGGCAGAGTTTACAAAGGAAATTTGGAAAGCATCAATCAGGTCGTGGCTATCAAACAACTTGATCGCAATGGATTGCAAGGGAACAGGGAGTTTCTCGTTGAAGTGTTGATGTTAAGCCTACTTCATCACCCAAATCTAGTCAATCTGATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTGATATATGAATATATGCCTCTAGGATCTTTAGATGACCATTTACATGACATTTCACCTGGTACAAAAGTACTAGATTGGAATACAAGAATGAAAATAGCTGCTGGGGCAGCACGAGGATTGGAATATTTGCACGACAAAGCTAGCCCACCAGTTATTTATCGAGATCTAAAAAGTTCCAACATTCTGCTTGATAAAGGTTATCATCCCAAGTTGTCTGATTTTGGATTGGCCAAACTTGGGCCTGTTGGGGACAATACACATGTGTCTACCAGAGTTATGGGCACTTACGGATATTGTGCTCCTGAATATGCAATGACTGGTCAGTTAACTCTCAAGTCAGATGTTTATAGCTTTGGTGTTGTCCTTTTAGAAATCATTACAGGCAGGAAAGCAATTGATGATTCAAGAGCTGCAGGGGAGCAAAATCTGGTTTCATGGGCAAGACCATTATTTAAAGACCGTCTGAGATTTGCACAAATGGCAGATCCAATGCTCAGAGGCCAATACCCTTCAAGGGGTTTGTATCAGGCTCTTGCAATTGCAGCAATGTGTGTACAAGATCAACCAAATATGCGCCCGGTGATCGCCGATGTCGTCACAGCTTTATCTTATCTTGCTTCCCAACGATACGACCCTGGTCCGAAAATCCCCCATGGCTCCCCTGCATCTGCTGCCTGTACTCCTCCAAGAAACAACAGAGATTCTGACAGGAAGCTTAATGGCGGTAGAAGATACGATAAAAATCACACTAGGAGACTATAA | 2685 | 43.5 | MDNKAAERVVIAKPVASRPTCSSFKSFSDILACAFNTSPPKTSSETMVTAIRPKTARFKLKDNPAPSPRAKISETLPGTTSRSSSENLTLSDSKSTVLFKPLAKHVSKRTVSQLSLMGNTSLQNHLPPPPVEAHIECLNQGTDNIKSALNSNLPRNITSAVENSQSIESSRVTLNYSKEDPTSLCPRISCAQPSYDGYNWRKYGQKQVKGSEYPRSYYKCTHPSCPVKKKVERSLDGKIAEIVYKGEHNHPKPQPLKHNSLATQGEGSISNGTARDTNSELWLNYLNGQFEGCESRFENQIDKTCQGRVTQSFDPVAIGEVNTGCGISDNSCGLSVEYEEGSKVLEPMGDKLRSKRRDGKNPTNEADTSSEGVKEQHAMARGSTDIEISGKGIRWRKYGQKVVKGNLYPRSYYRCTGLKCKARKYVERASDDPDSFITTYEGKHNHAHLRATPQAFEYISSLGPVERLYLGVSLVSPNPIGSFFSYCTHFRARQDCLCSFPFSTMYRKVKSKKLKKLESQKSQVDPIKAASDKLKTSSSFSEASKGGGSEHIKAQIFSFRELAAATKNFRADCLLGEGGFGRVYKGNLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLIYEYMPLGSLDDHLHDISPGTKVLDWNTRMKIAAGAARGLEYLHDKASPPVIYRDLKSSNILLDKGYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDDSRAAGEQNLVSWARPLFKDRLRFAQMADPMLRGQYPSRGLYQALAIAAMCVQDQPNMRPVIADVVTALSYLASQRYDPGPKIPHGSPASAACTPPRNNRDSDRKLNGGRRYDKNHTRRL | 894 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 45061822 | 45071087 | + | Lag0027103.1 | Lac10g3058 | 585589 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac10g3058 | 894 | FunFam | WRKY transcription factor | 186 | 254 | - | - | |
| Lac10g3058 | 894 | MobiDBLite | consensus disorder prediction | 853 | 894 | - | - | |
| Lac10g3058 | 894 | FunFam | Serine/threonine-protein kinase PBS1 | 542 | 645 | - | - | |
| Lac10g3058 | 894 | MobiDBLite | consensus disorder prediction | 347 | 383 | - | - | |
| Lac10g3058 | 894 | Pfam | Protein tyrosine and serine/threonine kinase | 573 | 841 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lac10g3058 | 894 | SUPERFAMILY | WRKY DNA-binding domain | 192 | 253 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac10g3058 | 894 | ProSiteProfiles | Protein kinase domain profile. | 569 | 846 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lac10g3058 | 894 | Gene3D | Transferase(Phosphotransferase) domain 1 | 646 | 853 | - | - | |
| Lac10g3058 | 894 | Gene3D | WRKY domain | 184 | 254 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac10g3058 | 894 | Gene3D | WRKY domain | 375 | 448 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac10g3058 | 894 | CDD | STKc_IRAK | 575 | 843 | - | - | |
| Lac10g3058 | 894 | SMART | serkin_6 | 569 | 846 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lac10g3058 | 894 | Gene3D | Phosphorylase Kinase; domain 1 | 541 | 645 | - | - | |
| Lac10g3058 | 894 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 692 | 704 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lac10g3058 | 894 | FunFam | Serine/threonine-protein kinase PBS1 | 646 | 859 | - | - | |
| Lac10g3058 | 894 | MobiDBLite | consensus disorder prediction | 73 | 90 | - | - | |
| Lac10g3058 | 894 | ProSitePatterns | Protein kinases ATP-binding region signature. | 575 | 598 | IPR017441 | GO:0005524(InterPro) | |
| Lac10g3058 | 894 | SMART | WRKY_cls | 194 | 252 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac10g3058 | 894 | SMART | WRKY_cls | 389 | 448 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac10g3058 | 894 | SUPERFAMILY | WRKY DNA-binding domain | 385 | 447 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac10g3058 | 894 | ProSiteProfiles | WRKY domain profile. | 384 | 446 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac10g3058 | 894 | ProSiteProfiles | WRKY domain profile. | 196 | 253 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac10g3058 | 894 | PANTHER | OS07G0668900 PROTEIN | 523 | 862 | - | - | |
| Lac10g3058 | 894 | MobiDBLite | consensus disorder prediction | 347 | 381 | - | - | |
| Lac10g3058 | 894 | PIRSF | SRK | 494 | 881 | IPR024171 | GO:0004674(InterPro) | |
| Lac10g3058 | 894 | PIRSF | SRK | 67 | 231 | IPR024171 | GO:0004674(InterPro) | |
| Lac10g3058 | 894 | MobiDBLite | consensus disorder prediction | 59 | 90 | - | - | |
| Lac10g3058 | 894 | SUPERFAMILY | Protein kinase-like (PK-like) | 552 | 841 | IPR011009 | - | |
| Lac10g3058 | 894 | Pfam | WRKY DNA -binding domain | 196 | 251 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac10g3058 | 894 | Pfam | WRKY DNA -binding domain | 392 | 446 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g3058 | Lac-Chr10:45061822 | Lac7g2600 | Lac-Chr7:44399152 | 2.20E-144 | dispersed | |
| Lac8g2724 | Lac-Chr8:44682047 | Lac10g3058 | Lac-Chr10:45061822 | 2.30E-45 | dispersed | |
| Lac9g2348 | Lac-Chr9:42749885 | Lac10g3058 | Lac-Chr10:45061822 | 8.10E-42 | dispersed | |
| Lac11g0447 | Lac-Chr11:4666933 | Lac10g3058 | Lac-Chr10:45061822 | 5.10E-71 | transposed | |
| Lac4g2132 | Lac-Chr4:40926327 | Lac10g3058 | Lac-Chr10:45061822 | 5.10E-148 | transposed | |
| Lac4g2582 | Lac-Chr4:44956306 | Lac10g3058 | Lac-Chr10:45061822 | 3.80E-74 | transposed | |
| Lac7g0849 | Lac-Chr7:6877120 | Lac10g3058 | Lac-Chr10:45061822 | 3.10E-152 | transposed | |
| Lac10g3058 | Lac-Chr10:45061822 | Lac13g0874 | Lac-Chr13:7114556 | 9.90E-84 | wgd | |
| Lac10g3058 | Lac-Chr10:45061822 | Lac9g2536 | Lac-Chr9:44009260 | 5.20E-133 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 22855 | PF07714 | PK_Tyr_Ser-Thr | 1.00E-44 | CL0016 | Lac | TF | |
| 85700 | PF07714 | PK_Tyr_Ser-Thr | 1.00E-44 | CL0016 | Lac | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac10g3058 | - | - | - | 0.0 |