Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3058 ATGGACAACAAAGCAGCAGAAAGAGTTGTTATTGCCAAACCGGTCGCTTCAAGGCCAACATGTTCCAGTTTTAAGTCATTCTCAGATATCCTTGCATGTGCCTTCAATACTTCTCCACCTAAGACATCATCTGAGACCATGGTTACTGCCATTAGGCCGAAAACAGCAAGGTTCAAGCTGAAGGATAATCCTGCTCCATCACCCAGGGCTAAAATATCAGAAACACTGCCTGGAACGACCTCTCGTAGTTCATCTGAAAATCTAACCTTATCAGACAGCAAATCCACTGTTTTATTCAAACCCTTGGCAAAACATGTATCGAAAAGGACTGTCTCTCAGCTGTCACTCATGGGGAACACTAGTTTGCAAAATCATTTACCACCGCCACCAGTCGAGGCCCATATTGAATGTCTGAACCAAGGTACAGACAATATCAAATCTGCACTGAACTCTAATCTCCCCCGGAACATCACATCTGCTGTTGAAAACAGTCAATCCATTGAAAGCTCAAGAGTGACATTGAATTATAGTAAAGAAGATCCAACTTCGCTTTGTCCTCGAATTAGTTGTGCTCAGCCTTCTTATGATGGGTATAACTGGCGGAAATATGGGCAAAAGCAAGTTAAGGGAAGCGAGTATCCACGGAGTTATTACAAGTGCACACATCCAAGTTGTCCTGTCAAAAAGAAGGTTGAGAGATCATTGGATGGGAAAATTGCTGAAATTGTTTACAAAGGTGAGCATAACCACCCAAAGCCTCAGCCTCTAAAGCATAACTCATTGGCAACACAAGGGGAAGGGTCGATATCAAATGGAACTGCACGAGATACTAATTCCGAATTATGGCTTAATTACCTCAATGGACAATTCGAAGGTTGTGAAAGTAGGTTCGAGAATCAGATCGACAAAACTTGTCAAGGAAGAGTCACACAATCCTTTGATCCGGTTGCAATTGGAGAAGTCAATACTGGATGTGGAATCTCGGATAATTCATGCGGTCTAAGTGTAGAATATGAAGAAGGAAGCAAAGTACTTGAGCCCATGGGTGATAAATTGCGAAGTAAAAGAAGGGATGGCAAAAATCCAACAAATGAAGCTGATACATCAAGTGAAGGTGTGAAAGAGCAGCACGCCATGGCTCGAGGTTCTACTGATATCGAGATTTCTGGCAAAGGCATTCGCTGGAGGAAATATGGGCAGAAAGTTGTGAAGGGAAATCTATATCCTCGAAGTTACTACAGATGTACTGGCCTCAAATGCAAAGCGCGCAAGTACGTCGAACGAGCATCCGATGATCCAGATTCCTTTATAACTACTTATGAAGGAAAACACAACCATGCCCATTTGCGGGCTACTCCTCAAGCCTTCGAGTACATATCTTCGCTTGGGCCGGTGGAGAGGCTCTACCTTGGCGTTTCATTGGTTTCTCCCAACCCAATAGGCTCTTTTTTCTCATATTGCACGCACTTTCGTGCCAGGCAAGACTGCCTTTGTTCCTTTCCTTTCTCCACAATGTACAGGAAGGTCAAGTCCAAGAAATTGAAGAAGTTGGAATCTCAGAAGAGCCAAGTTGATCCGATCAAAGCTGCTTCAGACAAACTAAAGACAAGTTCCTCCTTCAGTGAAGCCTCAAAAGGTGGGGGATCTGAGCATATCAAGGCACAGATATTTTCATTTCGGGAGTTGGCGGCCGCTACCAAAAATTTTAGGGCAGACTGTCTTTTGGGCGAGGGAGGTTTCGGCAGAGTTTACAAAGGAAATTTGGAAAGCATCAATCAGGTCGTGGCTATCAAACAACTTGATCGCAATGGATTGCAAGGGAACAGGGAGTTTCTCGTTGAAGTGTTGATGTTAAGCCTACTTCATCACCCAAATCTAGTCAATCTGATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTGATATATGAATATATGCCTCTAGGATCTTTAGATGACCATTTACATGACATTTCACCTGGTACAAAAGTACTAGATTGGAATACAAGAATGAAAATAGCTGCTGGGGCAGCACGAGGATTGGAATATTTGCACGACAAAGCTAGCCCACCAGTTATTTATCGAGATCTAAAAAGTTCCAACATTCTGCTTGATAAAGGTTATCATCCCAAGTTGTCTGATTTTGGATTGGCCAAACTTGGGCCTGTTGGGGACAATACACATGTGTCTACCAGAGTTATGGGCACTTACGGATATTGTGCTCCTGAATATGCAATGACTGGTCAGTTAACTCTCAAGTCAGATGTTTATAGCTTTGGTGTTGTCCTTTTAGAAATCATTACAGGCAGGAAAGCAATTGATGATTCAAGAGCTGCAGGGGAGCAAAATCTGGTTTCATGGGCAAGACCATTATTTAAAGACCGTCTGAGATTTGCACAAATGGCAGATCCAATGCTCAGAGGCCAATACCCTTCAAGGGGTTTGTATCAGGCTCTTGCAATTGCAGCAATGTGTGTACAAGATCAACCAAATATGCGCCCGGTGATCGCCGATGTCGTCACAGCTTTATCTTATCTTGCTTCCCAACGATACGACCCTGGTCCGAAAATCCCCCATGGCTCCCCTGCATCTGCTGCCTGTACTCCTCCAAGAAACAACAGAGATTCTGACAGGAAGCTTAATGGCGGTAGAAGATACGATAAAAATCACACTAGGAGACTATAA 2685 43.5 MDNKAAERVVIAKPVASRPTCSSFKSFSDILACAFNTSPPKTSSETMVTAIRPKTARFKLKDNPAPSPRAKISETLPGTTSRSSSENLTLSDSKSTVLFKPLAKHVSKRTVSQLSLMGNTSLQNHLPPPPVEAHIECLNQGTDNIKSALNSNLPRNITSAVENSQSIESSRVTLNYSKEDPTSLCPRISCAQPSYDGYNWRKYGQKQVKGSEYPRSYYKCTHPSCPVKKKVERSLDGKIAEIVYKGEHNHPKPQPLKHNSLATQGEGSISNGTARDTNSELWLNYLNGQFEGCESRFENQIDKTCQGRVTQSFDPVAIGEVNTGCGISDNSCGLSVEYEEGSKVLEPMGDKLRSKRRDGKNPTNEADTSSEGVKEQHAMARGSTDIEISGKGIRWRKYGQKVVKGNLYPRSYYRCTGLKCKARKYVERASDDPDSFITTYEGKHNHAHLRATPQAFEYISSLGPVERLYLGVSLVSPNPIGSFFSYCTHFRARQDCLCSFPFSTMYRKVKSKKLKKLESQKSQVDPIKAASDKLKTSSSFSEASKGGGSEHIKAQIFSFRELAAATKNFRADCLLGEGGFGRVYKGNLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLIYEYMPLGSLDDHLHDISPGTKVLDWNTRMKIAAGAARGLEYLHDKASPPVIYRDLKSSNILLDKGYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDDSRAAGEQNLVSWARPLFKDRLRFAQMADPMLRGQYPSRGLYQALAIAAMCVQDQPNMRPVIADVVTALSYLASQRYDPGPKIPHGSPASAACTPPRNNRDSDRKLNGGRRYDKNHTRRL 894
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 45061822 45071087 + Lag0027103.1 Lac10g3058 585589
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3058 894 FunFam WRKY transcription factor 186 254 - -
Lac10g3058 894 MobiDBLite consensus disorder prediction 853 894 - -
Lac10g3058 894 FunFam Serine/threonine-protein kinase PBS1 542 645 - -
Lac10g3058 894 MobiDBLite consensus disorder prediction 347 383 - -
Lac10g3058 894 Pfam Protein tyrosine and serine/threonine kinase 573 841 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g3058 894 SUPERFAMILY WRKY DNA-binding domain 192 253 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g3058 894 ProSiteProfiles Protein kinase domain profile. 569 846 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3058 894 Gene3D Transferase(Phosphotransferase) domain 1 646 853 - -
Lac10g3058 894 Gene3D WRKY domain 184 254 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g3058 894 Gene3D WRKY domain 375 448 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g3058 894 CDD STKc_IRAK 575 843 - -
Lac10g3058 894 SMART serkin_6 569 846 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3058 894 Gene3D Phosphorylase Kinase; domain 1 541 645 - -
Lac10g3058 894 ProSitePatterns Serine/Threonine protein kinases active-site signature. 692 704 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g3058 894 FunFam Serine/threonine-protein kinase PBS1 646 859 - -
Lac10g3058 894 MobiDBLite consensus disorder prediction 73 90 - -
Lac10g3058 894 ProSitePatterns Protein kinases ATP-binding region signature. 575 598 IPR017441 GO:0005524(InterPro)
Lac10g3058 894 SMART WRKY_cls 194 252 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g3058 894 SMART WRKY_cls 389 448 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g3058 894 SUPERFAMILY WRKY DNA-binding domain 385 447 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g3058 894 ProSiteProfiles WRKY domain profile. 384 446 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g3058 894 ProSiteProfiles WRKY domain profile. 196 253 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g3058 894 PANTHER OS07G0668900 PROTEIN 523 862 - -
Lac10g3058 894 MobiDBLite consensus disorder prediction 347 381 - -
Lac10g3058 894 PIRSF SRK 494 881 IPR024171 GO:0004674(InterPro)
Lac10g3058 894 PIRSF SRK 67 231 IPR024171 GO:0004674(InterPro)
Lac10g3058 894 MobiDBLite consensus disorder prediction 59 90 - -
Lac10g3058 894 SUPERFAMILY Protein kinase-like (PK-like) 552 841 IPR011009 -
Lac10g3058 894 Pfam WRKY DNA -binding domain 196 251 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g3058 894 Pfam WRKY DNA -binding domain 392 446 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3058 Lac-Chr10:45061822 Lac7g2600 Lac-Chr7:44399152 2.20E-144 dispersed
Lac8g2724 Lac-Chr8:44682047 Lac10g3058 Lac-Chr10:45061822 2.30E-45 dispersed
Lac9g2348 Lac-Chr9:42749885 Lac10g3058 Lac-Chr10:45061822 8.10E-42 dispersed
Lac11g0447 Lac-Chr11:4666933 Lac10g3058 Lac-Chr10:45061822 5.10E-71 transposed
Lac4g2132 Lac-Chr4:40926327 Lac10g3058 Lac-Chr10:45061822 5.10E-148 transposed
Lac4g2582 Lac-Chr4:44956306 Lac10g3058 Lac-Chr10:45061822 3.80E-74 transposed
Lac7g0849 Lac-Chr7:6877120 Lac10g3058 Lac-Chr10:45061822 3.10E-152 transposed
Lac10g3058 Lac-Chr10:45061822 Lac13g0874 Lac-Chr13:7114556 9.90E-84 wgd
Lac10g3058 Lac-Chr10:45061822 Lac9g2536 Lac-Chr9:44009260 5.20E-133 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22855 PF07714 PK_Tyr_Ser-Thr 1.00E-44 CL0016 Lac TF
85700 PF07714 PK_Tyr_Ser-Thr 1.00E-44 CL0016 Lac PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3058 - - - 0.0