Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3060 ATGACGGATTCAGTGAGAGGGATGATTATTTATAGGGAATCGAAGGATGCGAGAACGCGGAGAGTGAACATTGACAAAGCTTCGCTTTCAATCACTCAGAAAAGTCGTTGTATCGACGAAAGATTATTAAGTGTTCATTTTACAATGAAACATGTAGTTTTGCACGGATACCTTACTACAGGCTACATCATATGGACAAAAAGGGAGAAGGTTGTGAAGGTGACCGATGGCGATCGCCCAAAAAGGGAGAAGGTTGTGAAGTTCAACGGCCGGCGCTTGCGATGCGACTTCACACCAGTCCGAAGAAAACTTCCTGCCGTCCGAGACTCAGACCGAAGCTTTGTTCATGTCATTCCCTATAATTACTTCTCACTGAATGGGCCAGATTCTGCCGAACCACATCCATGGCGTCCGCCCAGTGAGGTGCAAGAAATTCCACCTCCGTCGTTGGACGCCACCGCCGAACAGCCTCCCCTGTTCGATGGAACTACCAGGTTGTATACTGCTTACATATGCCCTTATGCACACCGTGTTTGGATCATCCGGAATTTTAAGGGACTGCAAGATAAAATTAAGCTAGTTCCTCTCAACCTTTTTAATAGGCTTTCCTGGTATAAGGAGAAAGTATACTCTGTAAACAAGGTGCCATCTCTTGAACATAATGGAAAAGTTATTGGAGAAAGTCTTGATCTGCTCAAATATATTGATAGCAACTTTGAAGGGCCTTCTCTTCTTCCAGATGACTCTGGTAAAATAGAGTATGCCGAAGAGTTGATATCCTACAGCGAAACATTCAACGGCACAATAATCTCTGCATTTAAAGGTGACATCGCTAAGGAAGCAGGTGCTCAATTTGATTACTTGGAAAACGCTTTGCAAAAATTTGATGGCCCCTTCCTACTTGGAGAAATCAGTCAGGTGGATATAGCATACATTCCATTTGTTGAAAGGTTCCAAGTTTTCTTATTAGAGGCTCTCAAGTATGATATCACAGAAGGAAGGCCTAAACTAACTGCATGGATTGAGTTTCATCTACCTGCTTTCTTGTTCCTTGGTTTCTCGGCTTCCAATGCATGTTTTCCTATCTTTGGATTTGAACCACAGATCTTGTAG 1113 43.22 MTDSVRGMIIYRESKDARTRRVNIDKASLSITQKSRCIDERLLSVHFTMKHVVLHGYLTTGYIIWTKREKVVKVTDGDRPKREKVVKFNGRRLRCDFTPVRRKLPAVRDSDRSFVHVIPYNYFSLNGPDSAEPHPWRPPSEVQEIPPPSLDATAEQPPLFDGTTRLYTAYICPYAHRVWIIRNFKGLQDKIKLVPLNLFNRLSWYKEKVYSVNKVPSLEHNGKVIGESLDLLKYIDSNFEGPSLLPDDSGKIEYAEELISYSETFNGTIISAFKGDIAKEAGAQFDYLENALQKFDGPFLLGEISQVDIAYIPFVERFQVFLLEALKYDITEGRPKLTAWIEFHLPAFLFLGFSASNACFPIFGFEPQIL 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45086947 45091486 - Lag0027105.1 Lac10g3060 585591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3060 370 SUPERFAMILY Thioredoxin-like 157 244 IPR036249 -
Lac10g3060 370 Gene3D Glutaredoxin 139 240 - -
Lac10g3060 370 Gene3D - 241 345 - -
Lac10g3060 370 SUPERFAMILY GST C-terminal domain-like 239 342 IPR036282 -
Lac10g3060 370 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 162 243 IPR004045 -
Lac10g3060 370 Pfam Glutathione S-transferase, N-terminal domain 166 242 IPR004045 -
Lac10g3060 370 Pfam Glutathione S-transferase, C-terminal domain 280 342 - -
Lac10g3060 370 FunFam Glutathione S-transferase L2, chloroplastic 138 240 - -
Lac10g3060 370 PANTHER GLUTATHIONE S-TRANSFERASE L1 141 342 IPR044629 GO:0004364(InterPro)|GO:0004364(PANTHER)|GO:0010731(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3060 Lac-Chr10:45086947 Lac10g3062 Lac-Chr10:45103231 1.10E-97 dispersed
Lac10g3060 Lac-Chr10:45086947 Lac10g3061 Lac-Chr10:45091571 2.40E-100 tandem
Lac10g3060 Lac-Chr10:45086947 Lac13g0871 Lac-Chr13:7072635 3.70E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3060 K00799 - csv:101210504 363.229