Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac10g3061 | ATGGCTGCCCTAGTGAAAGAGGTTCTACCTCCGACGTTGGAGGCCACCGCCGAACAACCTCCTCTGTTCGACGGAACTACCAGGTTGTATACTGCTTACATATGCCCATATGCTCAACGTGTGTGGATCACCCGGAATTACAAGGGACTACAAGATAAAATTAAGCTAGTTCCTCTCAACCTTTTTAATAGGCCTGACTGGTACAAGGAGAAAGTATACCCTGCAAACAAGGTGCCATCTCTGGAACATAACGGGAAAATTATTGGAGAAAGTCTTGATCTGGTCAAATATGTTGATAGCAACTTTGAAGGACCTTCTCTTCTCCCAGATGATCCTGCTAAAAGAGAGTACGCCGAAGAGTTGCTATCCTACACCGATACATTTAATGGTGCAATAATCTCTTCTTTTAAAGGCGACATCGCAAAGGAAGCAGGTGCTCAATTTGATTACTTGGAAAATGCTTTGCAAAAATTCGATGGCCCCTTCTTCCTTGGAGAAATCAGTCAGGTGGATATAGCATACATTCCATTTGTTGAAAGGTTCCACATTGTCTTATTGGAAGCTCTCAAGATTGATATCACAGAAGGAAGGCCTAAACTAGCTGCATGGATTGAGGAGTTCAACAAGATTGATGCTTACAAACAAACAAAGGCAGACCCCAAGGCGGTTGTTGAAGTTTATACAAAGCGATTCTTGGTAACATTTGCTTTGCACAACTAA | 720 | 42.64 | MAALVKEVLPPTLEATAEQPPLFDGTTRLYTAYICPYAQRVWITRNYKGLQDKIKLVPLNLFNRPDWYKEKVYPANKVPSLEHNGKIIGESLDLVKYVDSNFEGPSLLPDDPAKREYAEELLSYTDTFNGAIISSFKGDIAKEAGAQFDYLENALQKFDGPFFLGEISQVDIAYIPFVERFHIVLLEALKIDITEGRPKLAAWIEEFNKIDAYKQTKADPKAVVEVYTKRFLVTFALHN | 239 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 45091571 | 45095516 | + | Lag0027106.1 | Lac10g3061 | 585592 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac10g3061 | 239 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 25 | 106 | IPR004045 | - | |
| Lac10g3061 | 239 | SFLD | Glutathione Transferase (cytosolic) | 28 | 207 | IPR040079 | - | |
| Lac10g3061 | 239 | FunFam | Glutathione S-transferase L2, chloroplastic | 1 | 103 | - | - | |
| Lac10g3061 | 239 | SUPERFAMILY | Thioredoxin-like | 20 | 107 | IPR036249 | - | |
| Lac10g3061 | 239 | CDD | GST_C_Lambda | 111 | 227 | - | - | |
| Lac10g3061 | 239 | Gene3D | - | 104 | 235 | - | - | |
| Lac10g3061 | 239 | PANTHER | GLUTATHIONE S-TRANSFERASE L1 | 2 | 235 | IPR044629 | GO:0004364(InterPro)|GO:0004364(PANTHER)|GO:0010731(PANTHER) | |
| Lac10g3061 | 239 | FunFam | Lambda class glutathione S-transferase | 104 | 234 | - | - | |
| Lac10g3061 | 239 | Pfam | Glutathione S-transferase, C-terminal domain | 143 | 205 | - | - | |
| Lac10g3061 | 239 | SFLD | Main (cytGST) | 28 | 207 | - | - | |
| Lac10g3061 | 239 | Gene3D | Glutaredoxin | 1 | 103 | - | - | |
| Lac10g3061 | 239 | Pfam | Glutathione S-transferase, N-terminal domain | 29 | 105 | IPR004045 | - | |
| Lac10g3061 | 239 | SUPERFAMILY | GST C-terminal domain-like | 102 | 231 | IPR036282 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g3061 | Lac-Chr10:45091571 | Lac13g0871 | Lac-Chr13:7072635 | 3.80E-91 | dispersed | |
| Lac10g3060 | Lac-Chr10:45086947 | Lac10g3061 | Lac-Chr10:45091571 | 2.40E-100 | tandem | |
| Lac10g3061 | Lac-Chr10:45091571 | Lac10g3062 | Lac-Chr10:45103231 | 6.90E-109 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac10g3061 | K00799 | - | csv:101211241 | 434.106 |