Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3062 ATGGCTACTCTAAATGCGGTGCCGGAAGTTCGTCCACCGTCATTGGAAGCCAATGCCGAACAACCTCCCCTTTTCGATGGAACCACCAGGTTGTATATGGCTTATTATTGCCCGTTTGCACAGCGTGCTTGGATCACAAGAAATTACAAGGGGTTACAAGATAAAATTAAACTTGTGCCTCTAAACCTTCAAAACAGGCCTGTCTGGTATAAGGAAAAAGTCAACCCTTCAAACAAGGTGCCAGCTTTGGAGCACAATGGAAAAGTTATTGGAGAAAGCCTTGATTTGATCAAATACATAGATAGTAACTTTGAAGGACCTTCTCTTTTCCCAGATGATCCTGCCAAAAGACAATTTGGTGAAGAGTTGCTAGCTTATACCGATACATTTACTGGGGCAGTATACCCTTCATTTAAGGGTGACCCAGCTAAGGAAGCAGGTCCACAATTTGATTACCTTGAGAATGCTCTGCAGAAATTTGATGATGGGCCATTCTTTTTGGGTCAATTCAGTGGGGTGGACATTGCATACATCACATTTATTGAAAGGTTCCATGTTTTCTTAGCTGAGGTTTTCAAGTATGATATCACAGAAGGAAGGCCTAATCTAGCTGCATGGATTGAGGAGTTCAACAAGATTGATGCTTACAAGCAAACCAAATACGATCCTAAAGCCATTGTTGAACTTTACAAGAAACGTTTCATGGTACCATATGCTTTAACACAATATCTTTCTATAATTAGATTACTTTTCTCTAATAATTTTCATTGCTTCAACTCCTTTACGATGATCGTAAATGCAACTTTTGTTGTTGTCAGAGTGGAAGAGGTTCTACCTCCGTCGTTGGACGCCACCGCCGAACAACCTCCTCTGTTCGACGGAACTACCAGGTTGTATACTGCTTACATATGCCCATATGCTCAACGTGTGTGGATCACCCGGAATTACAAGGGACTACAAGACAAAATTAAGCTATTTCCTCTCAACCTTTTAAATAGGCCTGACTGGTATAAGGAAAAAGTATACCCTGTAAACAAGGTTCCATCTCTGGAACATAATGGGAAAGTTATTGGAGAAAGTCTTGATCTGATCAAATATGTTGATAGCAACTTTGAAGGACCTTCTCTTCTCCCAGATGATCCTGCTAAAAGAGAGTATGCTGAAGAGTTGCTATCCTACAGTGATACGTTTATTGGTGCAGTAGTCTCTTCATTTAAAGGTGACACTGCAAAGGAAGCAGGTGCTCAATTTGATTATTTGGAAAATGCTTTGCATAAATTCGATGGCCCCTTCCTCCTTGGGGAAATCAGTCAGGTGGATATAGGATACATTCCATTTATTGAAAGGTACCACATTGTCTTATTGGAGGTTCTCAAGATTGACATCACAGAAGGAAGGCCTAAACTAGCTGCATGGATTGAGGTGCGTAGTATGTGCATTTTGCATTCTGATAGCTTTGTTGTGAAGATAAATGGTTTATTCTATACTTTCTAG 1494 40.5 MATLNAVPEVRPPSLEANAEQPPLFDGTTRLYMAYYCPFAQRAWITRNYKGLQDKIKLVPLNLQNRPVWYKEKVNPSNKVPALEHNGKVIGESLDLIKYIDSNFEGPSLFPDDPAKRQFGEELLAYTDTFTGAVYPSFKGDPAKEAGPQFDYLENALQKFDDGPFFLGQFSGVDIAYITFIERFHVFLAEVFKYDITEGRPNLAAWIEEFNKIDAYKQTKYDPKAIVELYKKRFMVPYALTQYLSIIRLLFSNNFHCFNSFTMIVNATFVVVRVEEVLPPSLDATAEQPPLFDGTTRLYTAYICPYAQRVWITRNYKGLQDKIKLFPLNLLNRPDWYKEKVYPVNKVPSLEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPAKREYAEELLSYSDTFIGAVVSSFKGDTAKEAGAQFDYLENALHKFDGPFLLGEISQVDIGYIPFIERYHIVLLEVLKIDITEGRPKLAAWIEVRSMCILHSDSFVVKINGLFYTF 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45103231 45110952 - Lag0027107.1 Lac10g3062 585593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3062 497 MobiDBLite consensus disorder prediction 1 21 - -
Lac10g3062 497 SUPERFAMILY GST C-terminal domain-like 104 234 IPR036282 -
Lac10g3062 497 Gene3D Glutaredoxin 2 105 - -
Lac10g3062 497 Gene3D Glutaredoxin 270 372 - -
Lac10g3062 497 FunFam Glutathione S-transferase L2, chloroplastic 2 105 - -
Lac10g3062 497 Pfam Glutathione S-transferase, C-terminal domain 150 208 - -
Lac10g3062 497 Pfam Glutathione S-transferase, C-terminal domain 415 474 - -
Lac10g3062 497 CDD GST_C_Lambda 113 231 - -
Lac10g3062 497 Gene3D - 373 480 - -
Lac10g3062 497 Gene3D - 106 237 - -
Lac10g3062 497 FunFam Lambda class glutathione S-transferase 106 237 - -
Lac10g3062 497 Pfam Glutathione S-transferase, N-terminal domain 31 107 IPR004045 -
Lac10g3062 497 Pfam Glutathione S-transferase, N-terminal domain 298 374 IPR004045 -
Lac10g3062 497 PANTHER GLUTATHIONE S-TRANSFERASE L1 6 264 IPR044629 GO:0004364(InterPro)|GO:0004364(PANTHER)|GO:0010731(PANTHER)
Lac10g3062 497 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 27 108 IPR004045 -
Lac10g3062 497 SFLD Main (cytGST) 30 210 - -
Lac10g3062 497 SUPERFAMILY Thioredoxin-like 21 109 IPR036249 -
Lac10g3062 497 SUPERFAMILY GST C-terminal domain-like 371 474 IPR036282 -
Lac10g3062 497 SFLD Glutathione Transferase (cytosolic) 30 210 IPR040079 -
Lac10g3062 497 SFLD Glutathione Transferase (cytosolic) 297 474 IPR040079 -
Lac10g3062 497 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 294 375 IPR004045 -
Lac10g3062 497 FunFam Glutathione S-transferase L2, chloroplastic 269 372 - -
Lac10g3062 497 SUPERFAMILY Thioredoxin-like 289 376 IPR036249 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3060 Lac-Chr10:45086947 Lac10g3062 Lac-Chr10:45103231 1.10E-97 dispersed
Lac10g3062 Lac-Chr10:45103231 Lac13g0871 Lac-Chr13:7072635 5.00E-93 dispersed
Lac10g3061 Lac-Chr10:45091571 Lac10g3062 Lac-Chr10:45103231 6.90E-109 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3062 K00799 - csv:101210004 452.981