Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3064 ATGGTTAAACCCTGCTGGAAACCTCATGATGATGACGATTCGAACGGACGAGTTGATGGATTGTTGTGGTCTAAGGATCTGGGGCATCATGTTTATGGACAATTCTCCATGGCAGTAATCCAAGCTAATAATGTGGTGGAAGATCAAAGCCAGCTTGAATCTGGGGCATTGAGTATGTCCAATCCAGGTCCACAGGGGACCTTCGTCGGAGTTTATGATGGTCATGGTGGAACCGAAGCTTCACGGTTCGTCAACGACAATCTCTTCAGCAATCTCAAAAGATATGCATCTTTGCACCAAAACATTTCAGAAAACGTTATCAGGAAGGCTTTTGCAGCAACAGAAGAGGGGTTTCTCTCTCTTGTCCAGAAACAGTGGCTTAATGAACCAAAGATTGCATCTGCTGGATCATGTTGTTTGGTGGGCATCATATGCAATGGACAGCTATATATTGCAAATGCAGGCGATTCGCGAGTAGTACTCGGGAGAACTGAGAGAGCCACTAGAGAAGTCATCGCCATTCAATTGTCCGCAGAGCACAATGCAAGCATAGAGGCAGTGAGAGATGAACTTCGGATGGTTCATCCAGATGATCCTCAGATTGTGATCCTAAAACACAATGTTTGGCGTGTTAAAGGTCTCATACAGGTTTCAAGATCCATTGGCGATGCATATTTGAAAAAGGCAAAGTTCAACAGGCCTCCTCTGCCGCCTAAATTTCAACTGCCTGAGCCATTTTACAAACCGATCCTCAGCGCAGAACCATCAATACTGGTACACAAACTCCGCCCAGATGATCAATATCTAATATTTGCTTCTGATGGCCTGTGGGAGCACCTTAGCAACCAGAAGGCCGTTGACATCGTCAACAGCTATCCTCGAAATGGAATAGCAAGGAGACTTGTCAAGGCTGCACTTCGAGAAGCAGCTAAAAAAAGAGAGATGAGATATTCAGACCTGAAAAAGATCGATAGAGGTGTGAGAAGGCATTTCCACGATGACATTTCTGTTGTAGTTGTGTTCTTAGATCCTCATTTGATCAATGGTAGGCCTTCCCCTTGTTCCTTGTCAATCAGAGGAGGAGAAGGTCTCCCTTCGTCAGCAAACTCCTAG 1113 45.19 MVKPCWKPHDDDDSNGRVDGLLWSKDLGHHVYGQFSMAVIQANNVVEDQSQLESGALSMSNPGPQGTFVGVYDGHGGTEASRFVNDNLFSNLKRYASLHQNISENVIRKAFAATEEGFLSLVQKQWLNEPKIASAGSCCLVGIICNGQLYIANAGDSRVVLGRTERATREVIAIQLSAEHNASIEAVRDELRMVHPDDPQIVILKHNVWRVKGLIQVSRSIGDAYLKKAKFNRPPLPPKFQLPEPFYKPILSAEPSILVHKLRPDDQYLIFASDGLWEHLSNQKAVDIVNSYPRNGIARRLVKAALREAAKKREMRYSDLKKIDRGVRRHFHDDISVVVVFLDPHLINGRPSPCSLSIRGGEGLPSSANS 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45114951 45116439 - Lag0027109.1 Lac10g3064 585595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3064 370 Gene3D - 23 349 IPR036457 -
Lac10g3064 370 SUPERFAMILY PP2C-like 32 344 IPR036457 -
Lac10g3064 370 ProSitePatterns PPM-type phosphatase domain signature. 68 76 IPR000222 GO:0043169(InterPro)
Lac10g3064 370 SMART PP2C_4 12 340 IPR001932 -
Lac10g3064 370 ProSiteProfiles PPM-type phosphatase domain profile. 34 342 IPR001932 -
Lac10g3064 370 FunFam Phosphatase 2C family protein 23 351 - -
Lac10g3064 370 PANTHER PROTEIN PHOSPHATASE 28 341 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lac10g3064 370 Pfam Protein phosphatase 2C 61 311 IPR001932 -
Lac10g3064 370 CDD PP2Cc 32 342 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3064 Lac-Chr10:45114951 Lac9g1843 Lac-Chr9:38204733 7.10E-145 dispersed
Lac10g3064 Lac-Chr10:45114951 Lac13g0870 Lac-Chr13:7066149 1.20E-149 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3064 K01102 - csv:101210750 712.99