Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3066 ATGGAAGAATTATTAGAACCCCCTGCTGTCATCATGGCCGCCCTCTCCGCCCTCTCTCCGCCGCATCTCTCCGATCTCTCCCACTCCATCTTCTCCGACATCCACCACCGCCGCCGCCGCCTCACCTTCATCCTCTCCTCCCCAACCCTCTTCTCCCTCACTCTCCGCCACCTCAATTCACTCTCCCTCTCCCACAAATCTCTCCTCATCGCCCGCTTCCTTCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAGCCGCCGTCCAAGTCCCTCCCCCACCACCCCTCCACCGCCGCCGTCACCCCCCGGGACCTCGACGCCGCCGTCCTTCTCCTCCTCCTCTGCGAGGTCCGACAGCACAGTCCTGCCGCCCTCCAAACTCCGATCACAAAATGGCGATCGACCCTCTGCAGAATCTACTCCGATTCCCTCTTGACGGTCTCCGGCGTCGCCACCGGCGGCCCCGGGGTTCTTATTCCGTACATTGAGACGGTGGCGAGGTGCTGGAAGTTCGTGGGGTTCGTCGGGAGCTGCAGCGGCGGGAAGGCCCGGAGAGAGGTGGCGGCGTCGCCGGTGGCGGTGGTGGAGCTGCCGTCGGTGGCGGTGGGCGGCGGGGCGGCGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGGACGAAGGGAGAGACGCGTGTCAATTGCCTTGTGAACACTTATTCCATTGGCTCTGTATTCTGCCATGGCTGAGGAAGAGGAACACGTGTCCCTGTTGCAGGTTTCAGCTTCCAACCGATGACATTTTCGGCGAGATCCAACGGCTCTGGGAGATCCTCGTCAAGGTGGGCTCCACGTCTGATGGAGATCAACGTCCAGGATTGAATGGTCGCATGGAATTAGGATAG 885 62.03 MEELLEPPAVIMAALSALSPPHLSDLSHSIFSDIHHRRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLIARFLLSALRRLSRPFQPPSKSLPHHPSTAAVTPRDLDAAVLLLLLCEVRQHSPAALQTPITKWRSTLCRIYSDSLLTVSGVATGGPGVLIPYIETVARCWKFVGFVGSCSGGKARREVAASPVAVVELPSVAVGGGAAAVECVICKEEMDEGRDACQLPCEHLFHWLCILPWLRKRNTCPCCRFQLPTDDIFGEIQRLWEILVKVGSTSDGDQRPGLNGRMELG 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45127059 45127943 - Lag0027111.1 Lac10g3066 585597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3066 294 SUPERFAMILY RING/U-box 206 259 - -
Lac10g3066 294 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 185 258 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Lac10g3066 294 CDD RING-H2_PA-TM-RING 211 253 - -
Lac10g3066 294 ProSiteProfiles Zinc finger RING-type profile. 212 253 IPR001841 -
Lac10g3066 294 Pfam Ring finger domain 211 253 IPR001841 -
Lac10g3066 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 263 IPR013083 -
Lac10g3066 294 SMART ring_2 212 252 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3066 Lac-Chr10:45127059 Lac1g1749 Lac-Chr1:38992170 7.90E-14 dispersed
Lac10g3066 Lac-Chr10:45127059 Lac13g0999 Lac-Chr13:8414110 3.90E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3066 - - - 0.0