Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3089 ATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGCCGCTGGGGAAAGAGAGTGCTTCGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGATACGGAACCCGAGGCGTTTCACAACAAGAAGCAGGCAAAAGAAGTGTCGAATGAAGACGTTCGTTCAGAAGTTTCGAATCCCGTAATTTCTCCGAAAGGGAACCATTTCCAAGATATTACCAGCCAGCCAGACGAGCAAGAAAATACCAACCAAGTCGAGCGCGGGGACCTCACGTCAGCTTGTTCGGGAAATTCAAGCTCAGAGGATACCTCAAGCGATGGAGCTCCTTGCCAGAACAATACGTCTCGAAATGACGCTGATATGTGTGATGTTGATGAGGTCTCCCGGTTTGTGATTGAAATTCCTAAGCATGCTAGTTCAACTGGAATTAGGAAAATTACGTTCAAGTTCAGCAAAAAAAAGGACAACAAAGTTCATTCTTATGGAAACTCTGACAAGGATGGTAAACCAGAACCATCAACAGTGGATGATGCTTATACGGAGACATCTGCACATAGCTGGGAAGGCTGTTCTGAGAGCAACAGATTTCCTTCAGGCCCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTACCCGTCAAATGTTAAAAAGCTGCTGTCGACTGGTATACTTGACGGAGCTCGAGTCAAGTATATATCTACGACGAGTGAGATAAAGCTAAATGGTATTATAAATGGCGGAGGTTATATGTGCGGATGTTCAATATGCAATTTTACTGCTATCCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACCTTGAGAATGGGAGGCCAATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTAAGGAAGTAGCGGGTTCATCTGTCAACGTGGATTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAAAACAGTGCAAGTATTGAAGTGGAAAATGATGATGCGAAGCTTCCTAAATTGTCACATTCCATTGAGAGACCAAACCCTAATTTAACCAACCCAGTCATGCAACAGAAGAAAACGGCAGAAAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGGCTACTTTTCATGCCAAATGGGCTTCCAGATGGGGCTGAGCTGGCTTACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATACTCTGTAGTCACTGTAATCGAGAGATTAGTCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCCTACCGCCATATTTATACTACAAATGGACTTACACTTCATGATATTGCCATTTCCCTGGCTAGTGGGCAAAAACTTACCACCGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGGGATTTGATTTTCTGTGATCGCTGTCCTCGAGCTTTCCATACAGGGTGCCTGCATCTGCAAAATGTTCCTGAAGGAGTTTGGTGTTGCCCTAACTGTAGAGATAAAGTGGGTTCCAGTTTGAAGGCTGCTTCCGGAGGATCTTTGAGTTTTCCAAAGCCAATTGTATTCAGGTTGACACGAGTTGTTAAAGCACCTGAGTATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCAGCTAAATTTGATGATCGAACTGTACTGCTATGTGATCAATGTGAAAGAGAATTCCATGTAGGCTGTCTGCGGGATAGTGGATTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATGTGGCCCTTCAGAATACAGTTTTGAACGGGGCACAGATTATCCCAGATTCATTATCAGATTTAATAATCAGAAAGCACGTTGGAAAAGGATTATTAGTTGATGAAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTACCCAGAAGATCTTCCATTTCTTTCAAGGGCGACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATTTGATACCCGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTCTAATTGTGAGGTCAATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCTGAGCTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCTTAAATGTGCAAAACCTTGTACTCCCTGCAGCCGAGGATGCTGAATCAATTTGGACCAAGAAATTGGGTTTCAGAAAGATGAGTGAAGAACAACCAGCTAATAGATATGTTAAAGCGTTTCTCATGTTGTTATCTATGATTGGCCAGTTGATAAAGTACATGAGGGAGGTCCAGCTGACGATCTTCAATGGAACATCGATGCTAGAGAAGGTGGTGCAGCAGTCGACCTTATGA 2559 42.79 MGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPEAFHNKKQAKEVSNEDVRSEVSNPVISPKGNHFQDITSQPDEQENTNQVERGDLTSACSGNSSSEDTSSDGAPCQNNTSRNDADMCDVDEVSRFVIEIPKHASSTGIRKITFKFSKKKDNKVHSYGNSDKDGKPEPSTVDDAYTETSAHSWEGCSESNRFPSGPNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISTTSEIKLNGIINGGGYMCGCSICNFTAILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSSVNVDSFEAWKASFHQNSASIEVENDDAKLPKLSHSIERPNPNLTNPVMQQKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAFHTGCLHLQNVPEGVWCCPNCRDKVGSSLKAASGGSLSFPKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGAQIIPDSLSDLIIRKHVGKGLLVDEALNDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQPANRYVKAFLMLLSMIGQLIKYMREVQLTIFNGTSMLEKVVQQSTL 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45299837 45306347 - Lag0027134.1 Lac10g3089 585620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3089 852 SMART PHD_3 483 524 IPR001965 -
Lac10g3089 852 SMART PHD_3 562 619 IPR001965 -
Lac10g3089 852 MobiDBLite consensus disorder prediction 57 121 - -
Lac10g3089 852 MobiDBLite consensus disorder prediction 1 122 - -
Lac10g3089 852 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 671 822 IPR000182 GO:0016747(InterPro)
Lac10g3089 852 Pfam Tify domain binding domain 250 304 IPR032308 -
Lac10g3089 852 Pfam Tify domain binding domain 417 466 IPR032308 -
Lac10g3089 852 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 718 819 IPR016181 -
Lac10g3089 852 Gene3D - 665 828 - -
Lac10g3089 852 MobiDBLite consensus disorder prediction 21 56 - -
Lac10g3089 852 FunFam PHD zinc finger protein 561 621 - -
Lac10g3089 852 MobiDBLite consensus disorder prediction 159 177 - -
Lac10g3089 852 PANTHER AUTOIMMUNE REGULATOR 25 849 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Lac10g3089 852 MobiDBLite consensus disorder prediction 159 179 - -
Lac10g3089 852 ProSitePatterns Zinc finger PHD-type signature. 484 523 IPR019786 -
Lac10g3089 852 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 472 539 IPR013083 -
Lac10g3089 852 MobiDBLite consensus disorder prediction 357 384 - -
Lac10g3089 852 ProSiteProfiles Zinc finger PHD-type profile. 560 621 IPR019787 -
Lac10g3089 852 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 561 621 IPR013083 -
Lac10g3089 852 Pfam PHD-finger 484 523 IPR019787 -
Lac10g3089 852 MobiDBLite consensus disorder prediction 361 376 - -
Lac10g3089 852 SUPERFAMILY FYVE/PHD zinc finger 561 616 IPR011011 -
Lac10g3089 852 SUPERFAMILY FYVE/PHD zinc finger 479 527 IPR011011 -
Lac10g3089 852 ProSiteProfiles Zinc finger PHD-type profile. 481 526 IPR019787 -
Lac10g3089 852 ProSitePatterns Zinc finger PHD-type signature. 563 618 IPR019786 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3089 Lac-Chr10:45299837 Lac9g2636 Lac-Chr9:44802238 2.50E-153 dispersed
Lac10g3089 Lac-Chr10:45299837 Lac13g0962 Lac-Chr13:7982192 4.90E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22856 PF16135 TDBD 5.40E-12 No_clan Lac TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3089 - - - 0.0