Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3089 ATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGCCGCTGGGGAAAGAGAGTGCTTCGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGATACGGAACCCGAGGCGTTTCACAACAAGAAGCAGGCAAAAGAAGTGTCGAATGAAGACGTTCGTTCAGAAGTTTCGAATCCCGTAATTTCTCCGAAAGGGAACCATTTCCAAGATATTACCAGCCAGCCAGACGAGCAAGAAAATACCAACCAAGTCGAGCGCGGGGACCTCACGTCAGCTTGTTCGGGAAATTCAAGCTCAGAGGATACCTCAAGCGATGGAGCTCCTTGCCAGAACAATACGTCTCGAAATGACGCTGATATGTGTGATGTTGATGAGGTCTCCCGGTTTGTGATTGAAATTCCTAAGCATGCTAGTTCAACTGGAATTAGGAAAATTACGTTCAAGTTCAGCAAAAAAAAGGACAACAAAGTTCATTCTTATGGAAACTCTGACAAGGATGGTAAACCAGAACCATCAACAGTGGATGATGCTTATACGGAGACATCTGCACATAGCTGGGAAGGCTGTTCTGAGAGCAACAGATTTCCTTCAGGCCCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTACCCGTCAAATGTTAAAAAGCTGCTGTCGACTGGTATACTTGACGGAGCTCGAGTCAAGTATATATCTACGACGAGTGAGATAAAGCTAAATGGTATTATAAATGGCGGAGGTTATATGTGCGGATGTTCAATATGCAATTTTACTGCTATCCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACCTTGAGAATGGGAGGCCAATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTAAGGAAGTAGCGGGTTCATCTGTCAACGTGGATTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAAAACAGTGCAAGTATTGAAGTGGAAAATGATGATGCGAAGCTTCCTAAATTGTCACATTCCATTGAGAGACCAAACCCTAATTTAACCAACCCAGTCATGCAACAGAAGAAAACGGCAGAAAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGGCTACTTTTCATGCCAAATGGGCTTCCAGATGGGGCTGAGCTGGCTTACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATACTCTGTAGTCACTGTAATCGAGAGATTAGTCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCCTACCGCCATATTTATACTACAAATGGACTTACACTTCATGATATTGCCATTTCCCTGGCTAGTGGGCAAAAACTTACCACCGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGGGATTTGATTTTCTGTGATCGCTGTCCTCGAGCTTTCCATACAGGGTGCCTGCATCTGCAAAATGTTCCTGAAGGAGTTTGGTGTTGCCCTAACTGTAGAGATAAAGTGGGTTCCAGTTTGAAGGCTGCTTCCGGAGGATCTTTGAGTTTTCCAAAGCCAATTGTATTCAGGTTGACACGAGTTGTTAAAGCACCTGAGTATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCAGCTAAATTTGATGATCGAACTGTACTGCTATGTGATCAATGTGAAAGAGAATTCCATGTAGGCTGTCTGCGGGATAGTGGATTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATGTGGCCCTTCAGAATACAGTTTTGAACGGGGCACAGATTATCCCAGATTCATTATCAGATTTAATAATCAGAAAGCACGTTGGAAAAGGATTATTAGTTGATGAAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTACCCAGAAGATCTTCCATTTCTTTCAAGGGCGACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATTTGATACCCGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTCTAATTGTGAGGTCAATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCTGAGCTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCTTAAATGTGCAAAACCTTGTACTCCCTGCAGCCGAGGATGCTGAATCAATTTGGACCAAGAAATTGGGTTTCAGAAAGATGAGTGAAGAACAACCAGCTAATAGATATGTTAAAGCGTTTCTCATGTTGTTATCTATGATTGGCCAGTTGATAAAGTACATGAGGGAGGTCCAGCTGACGATCTTCAATGGAACATCGATGCTAGAGAAGGTGGTGCAGCAGTCGACCTTATGA 2559 42.79 MGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPEAFHNKKQAKEVSNEDVRSEVSNPVISPKGNHFQDITSQPDEQENTNQVERGDLTSACSGNSSSEDTSSDGAPCQNNTSRNDADMCDVDEVSRFVIEIPKHASSTGIRKITFKFSKKKDNKVHSYGNSDKDGKPEPSTVDDAYTETSAHSWEGCSESNRFPSGPNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISTTSEIKLNGIINGGGYMCGCSICNFTAILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSSVNVDSFEAWKASFHQNSASIEVENDDAKLPKLSHSIERPNPNLTNPVMQQKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAFHTGCLHLQNVPEGVWCCPNCRDKVGSSLKAASGGSLSFPKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGAQIIPDSLSDLIIRKHVGKGLLVDEALNDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQPANRYVKAFLMLLSMIGQLIKYMREVQLTIFNGTSMLEKVVQQSTL 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45299837 45306347 - Lag0027134.1 Lac10g3089 585620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3089 852 SMART PHD_3 483 524 IPR001965 -
Lac10g3089 852 SMART PHD_3 562 619 IPR001965 -
Lac10g3089 852 MobiDBLite consensus disorder prediction 57 121 - -
Lac10g3089 852 MobiDBLite consensus disorder prediction 1 122 - -
Lac10g3089 852 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 671 822 IPR000182 GO:0016747(InterPro)
Lac10g3089 852 Pfam Tify domain binding domain 250 304 IPR032308 -
Lac10g3089 852 Pfam Tify domain binding domain 417 466 IPR032308 -
Lac10g3089 852 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 718 819 IPR016181 -
Lac10g3089 852 Gene3D - 665 828 - -
Lac10g3089 852 MobiDBLite consensus disorder prediction 21 56 - -
Lac10g3089 852 FunFam PHD zinc finger protein 561 621 - -
Lac10g3089 852 MobiDBLite consensus disorder prediction 159 177 - -
Lac10g3089 852 PANTHER AUTOIMMUNE REGULATOR 25 849 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Lac10g3089 852 MobiDBLite consensus disorder prediction 159 179 - -
Lac10g3089 852 ProSitePatterns Zinc finger PHD-type signature. 484 523 IPR019786 -
Lac10g3089 852 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 472 539 IPR013083 -
Lac10g3089 852 MobiDBLite consensus disorder prediction 357 384 - -
Lac10g3089 852 ProSiteProfiles Zinc finger PHD-type profile. 560 621 IPR019787 -
Lac10g3089 852 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 561 621 IPR013083 -
Lac10g3089 852 Pfam PHD-finger 484 523 IPR019787 -
Lac10g3089 852 MobiDBLite consensus disorder prediction 361 376 - -
Lac10g3089 852 SUPERFAMILY FYVE/PHD zinc finger 561 616 IPR011011 -
Lac10g3089 852 SUPERFAMILY FYVE/PHD zinc finger 479 527 IPR011011 -
Lac10g3089 852 ProSiteProfiles Zinc finger PHD-type profile. 481 526 IPR019787 -
Lac10g3089 852 ProSitePatterns Zinc finger PHD-type signature. 563 618 IPR019786 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3089 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3089 Lac-Chr10:45299837 Lac9g2636 Lac-Chr9:44802238 2.50E-153 dispersed
Lac10g3089 Lac-Chr10:45299837 Lac13g0962 Lac-Chr13:7982192 4.90E-40 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac2g1204 . 2 233 PHD Transcription Factor Family AT3G14980 64.7 7.7e-84 310.1
Lac10g3089 . 18 847 PHD Transcription Factor Family AT3G53680 53.7 7.0e-249 857.8
Lac13g0962 . 439 565 PHD Transcription Factor Family AT3G53680 55.1 6.5e-37 153.7
Lac9g2501 . 509 635 PHD Transcription Factor Family AT3G53680 53.9 1.1e-36 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22856 PF16135 TDBD 5.40E-12 No_clan Lac TR