Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3099 ATGAATTTTTCCTCCATTCCTGCTTATCTTGATCCTTCCAACTGGCAACAGCAAGTCACCCATCAAGTGGGAAGTAGCAGCAGCACTGGAGTTAGTTCTCAGCTTCCACCACCTCCACCTCCTCCACCGCCTCCTCCGCCGCCACCCCATGGCGTCGGTGGCAGCGGTTCGATCCGGCCCGGCTCGATGGCCGAGCGAGCTCGATTGGCGAATATTCCTATGCCTGAGGCAGCATTGAAATGCCCAAGATGTGAATCAACCAACACTAAGTTCTGTTACTTCAACAATTACAGCCTCACTCAGCCTCGCCACTTTTGCAAGACTTGTAGAAGGTACTGGACAAGAGGTGGGGCCCTGAGGAACGTCCCGGTCGGGGGCGGGTGCCGGAGGAACAAAAGAAGCAAAGGGAGCAGCTCGAAATCGCCGCCGGTCAGCTCGGACCGGCAACAAACCAGCGGTTCAGGCAATTCCTCATCAAGTGCAATAGCTTCCAACAACAGTGGAGGCCTTTCCCCACAGATCCCACCGCTCCGGTTCATGGCTCCTCTCCACCAACAGCTCAGTGACTTCGACATGGGACCCTTCAACTACGGCGGCGGCCTCTCATCTCCGGCCACCGCCGCCGGCGACCTGAGTTTCCAATTGGGCAACACCAATTTAGCTGGAGGAACAAGCATTGGATCTCTCTTGGGATTTGACCAACAATGGCGGCTCCAGCAACAATCTCCCCAATTTCCCTTCCTGTCCGGCCTTGACCCTTTCGACGGCGGTAGCAGCGGTGGCGGCGGAGACGCGTCCGGCTGGCAAATGAGGCCAAAATTACCATCAAGTTCAAGGAATTTAAGCCAGCAAATTGGGAATAATTCAGTGAAAATGGAAGAAACCCCAGATCATCAAGTTAATGTTGGAAGACAATTTCTTGGCAATGAGCAATATTGGAGCAGTGGATCAATGGCATGGTCAGATCTTTCTGGTTTCAGTTCTTCATCTTCAACAAGAAACCCATTATAG 1011 53.31 MNFSSIPAYLDPSNWQQQVTHQVGSSSSTGVSSQLPPPPPPPPPPPPPPHGVGGSGSIRPGSMAERARLANIPMPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSSSKSPPVSSDRQQTSGSGNSSSSAIASNNSGGLSPQIPPLRFMAPLHQQLSDFDMGPFNYGGGLSSPATAAGDLSFQLGNTNLAGGTSIGSLLGFDQQWRLQQQSPQFPFLSGLDPFDGGSSGGGGDASGWQMRPKLPSSSRNLSQQIGNNSVKMEETPDHQVNVGRQFLGNEQYWSSGSMAWSDLSGFSSSSSTRNPL 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45399575 45401088 - Lag0027144.1 Lac10g3099 585630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3099 336 ProSiteProfiles Zinc finger Dof-type profile. 79 133 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac10g3099 336 MobiDBLite consensus disorder prediction 252 283 - -
Lac10g3099 336 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 67 162 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g3099 336 MobiDBLite consensus disorder prediction 33 53 - -
Lac10g3099 336 MobiDBLite consensus disorder prediction 1 32 - -
Lac10g3099 336 MobiDBLite consensus disorder prediction 1 61 - -
Lac10g3099 336 ProSitePatterns Zinc finger Dof-type signature. 81 117 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac10g3099 336 MobiDBLite consensus disorder prediction 137 172 - -
Lac10g3099 336 MobiDBLite consensus disorder prediction 120 176 - -
Lac10g3099 336 Pfam Dof domain, zinc finger 78 133 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac10g3099 336 SUPERFAMILY Formin homology 2 domain (FH2 domain) 39 47 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3099 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3099 Lac-Chr10:45399575 Lac7g2704 Lac-Chr7:46109159 3.80E-44 dispersed
Lac10g3099 Lac-Chr10:45399575 Lac8g2507 Lac-Chr8:42922708 2.70E-50 wgd
Lac10g3099 Lac-Chr10:45399575 Lac9g2483 Lac-Chr9:43664546 1.90E-40 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g0947 . 15 170 C2C2-Dof Transcription Factor Family AT1G29160 52.5 1.6e-41 166.8
Lac10g0947 . 15 170 C2C2-Dof Transcription Factor Family AT2G34140 50.9 1.1e-39 160.6
Lac8g2507 . 1 136 C2C2-Dof Transcription Factor Family AT2G37590 66.7 6.8e-38 155.6
Lac7g2704 . 67 141 C2C2-Dof Transcription Factor Family AT2G37590 90.7 4.4e-37 152.9
Lac3g0612 . 115 466 C2C2-Dof Transcription Factor Family AT3G47500 53.1 2.2e-87 320.5
Lac8g0724 . 149 514 C2C2-Dof Transcription Factor Family AT3G47500 50.3 5.0e-76 282.7
Lac1g2524 . 1 149 C2C2-Dof Transcription Factor Family AT5G66940 56.3 2.7e-38 156.4
Lac7g2704 . 66 141 C2C2-Dof Transcription Factor Family AT5G02460 90.8 2.8e-38 157.1
Lac1g2032 . 53 126 C2C2-Dof Transcription Factor Family AT5G02460 87.8 9.0e-37 152.1
Lac10g3099 . 52 134 C2C2-Dof Transcription Factor Family AT3G55370 81.9 2.9e-37 153.7
Lac3g0537 . 29 325 C2C2-Dof Transcription Factor Family AT5G60850 52.9 2.4e-45 180.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004817 1 1 1 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22857 PF02701 zf-Dof 3.30E-32 No_clan Lac TF