Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3111 ATGGATCCACGCCTTAGACGACAGGCTGGTTCCACGAATGGAATTCTTATAGGTAATGGTTCTTTTGCGGTTCAATCACAAGAGAACGCTCTTGGCAGTTCTAGATTTCAGAATACCATTTTGAGTCATAACTTTCAAGAATTTGATTGCCTTCCCCCTGATCCATCACCGAGTAACATAGCCTCAAGCTCCAGTATTATCACCTCATCTTCTAATGATGCGAGTCATGAGGAGGATTATCTGGAAGATTGCGATTTTTCTGATGCTGTTTTGAGATTCATAAATCAGATTCTCATGGAAGAAGATATGGAGGACAAGACTTGCATGCTTCAAGATTCTTTGGATCTTCAAGCCGCCGAGAAACCATTCTACGAGGTCCTTGGAAAACAGTATCCTCCTTCCTCAGAACCAAGTAGATCTCTGGCCAATCAATACAGCGATAGCTTCAATGAAGAACTTTGTGGAGATAGTAGTAATTACCTGAATGGTTACAATAATACTTCTTATTATGGTGATGATAATCATTTTCAACCTCAGAGTGAAGATGTATTTCAAATCAGAAGCACTTTAGGTGATACCATTTCTCCATCATCTAATAGTTCCTCAAATAGTATAATTAGCGGGGCTGATGGGTGGGTAGACTTCTCGAATAATACAATTCGAGTCCCGGAGCCAAATAACAGAAGTCAATCTATTTGGCAGTTTCAAAAAGGGTTTGAAGAGGCAAGCAAATTTTTACCTGGTGGAAACAACCTGTGTCTTGATTTTGAGGTAAACGGGTCAGCAACTCAGGGTTCGGACGAGGGAACAAGCCAGATATCTGTGAAGGCAGCAAGAAAGGATCAGAGGGATGTTTTGTCGCTTGAATCGCGAGGAAGAAAGAATCCTCATGATGAGAATGGAGATTTGGAAGAAGAGAGAAGCAGCAAGCAAGCAGCTGTATTTACAGAATCAACCTTGCGATCTAAGATGTTTGATATTGTGTTGCTTTGTAGTGCAGGGGAGGGGCATGATCGGTTAGTTTCATTTCGACAGGAATTACAGAATGCTAAACTCAAAAGCATGCTGCAGACTGGGCAACTTAAAGAGTCTAATGGTGGGAGGGGTCGTCGGAAGAAGCAAAGTGGGAAAAAAGAGGTTGTGGATTTGAGAACTCTTCTAATTAGCTGTGCTCAAGCCGTTGCAGCTGATGACCACAGGAATGCCAATGAGCTTCTAAAGCAGGTCAGGCAACATGCCTCTCCTTTTGGGGATGGAAATCAGAGGTTGGCTAGTTGTTTTGCTGATGGTCTGGAGGCACGCTTGGCAGGCACTGGTAGCCAGATTTACAAAGGTCTAATTAATAAAAGAACATCTGCTGCTGATATATTGAAAGCCTACCACCTGTATCTTGCTGCATGCCCATTTAGGAAGATTTCTAATTTTACTTCAAACAGGACTATAATGATTGCTGCAGAGAATGCAACTAAGCTTCATGTCATAGATTTTGGTATTCTTTACGGTTTCCAGTGGCCTACTTTAATTCAGAGGCTGTCATGGAGAAAAGGAGGACCTCCAAAGCTTCGGATTACTGGAATAGAATTTCCCCAGCCTGGCTTCCGTCCGGCAGAGAGAGTTGAGGAGACAGGCCGTCGCTTGGCGGCCTATGCAGAGAGTTTTAACGTGCCATTTGAGTATAATGCTATCGCAAAAAAATGGGAAACAATTACAGTTGAAGATCTCAATATAGATCAGGATGAGTTCCTAGTTGTTAACTGTTTGTATCGAGCTAAAAATTTGCTTGAGGAGAGTGTTGCCACAGAGAGTGCTAGAAATACTGTTCTTAGATTGATACACAAAATTAATCCTAACTTATTCATTAGTGGCGTTGTCAATGGGGCATACAATGCTCCTTTCTTTGTCACCCGATTTCGAGAGGCTTTGTTTCACTTTTCTGCTATCTTTGATATGCTTGAAACTGTTGTACCTCGTGAGGATTGGGAGAGAATGCTGTTGGAGAGAGAGATCTTTGGCAGGGAAGCTTTAAATGTTATAGCATGTGAGGGATGGGAGCGAGTGGAAAGACCAGAAACATACAAGCAATGGCAATTCCGGATCATGAGGGCTGGATTTGTGCAACTACCTTTTGATCCTGAGATTTTTGGGAGAGCAGTTGAAAAGGTGCGGTCAAGTTACCACAAAGATTTTTTGATTGATGAAGATAGTAGATGGATACTGCAGGGATGGAAAGGTCGAATTATATATGCCATCTCTGCGTGGAAACCTACTACTGAGTAA 2277 42.25 MDPRLRRQAGSTNGILIGNGSFAVQSQENALGSSRFQNTILSHNFQEFDCLPPDPSPSNIASSSSIITSSSNDASHEEDYLEDCDFSDAVLRFINQILMEEDMEDKTCMLQDSLDLQAAEKPFYEVLGKQYPPSSEPSRSLANQYSDSFNEELCGDSSNYLNGYNNTSYYGDDNHFQPQSEDVFQIRSTLGDTISPSSNSSSNSIISGADGWVDFSNNTIRVPEPNNRSQSIWQFQKGFEEASKFLPGGNNLCLDFEVNGSATQGSDEGTSQISVKAARKDQRDVLSLESRGRKNPHDENGDLEEERSSKQAAVFTESTLRSKMFDIVLLCSAGEGHDRLVSFRQELQNAKLKSMLQTGQLKESNGGRGRRKKQSGKKEVVDLRTLLISCAQAVAADDHRNANELLKQVRQHASPFGDGNQRLASCFADGLEARLAGTGSQIYKGLINKRTSAADILKAYHLYLAACPFRKISNFTSNRTIMIAAENATKLHVIDFGILYGFQWPTLIQRLSWRKGGPPKLRITGIEFPQPGFRPAERVEETGRRLAAYAESFNVPFEYNAIAKKWETITVEDLNIDQDEFLVVNCLYRAKNLLEESVATESARNTVLRLIHKINPNLFISGVVNGAYNAPFFVTRFREALFHFSAIFDMLETVVPREDWERMLLEREIFGREALNVIACEGWERVERPETYKQWQFRIMRAGFVQLPFDPEIFGRAVEKVRSSYHKDFLIDEDSRWILQGWKGRIIYAISAWKPTTE 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45491599 45493875 + Lag0027156.1 Lac10g3111 585642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3111 758 MobiDBLite consensus disorder prediction 56 74 - -
Lac10g3111 758 MobiDBLite consensus disorder prediction 52 74 - -
Lac10g3111 758 Pfam GRAS domain family 383 754 IPR005202 -
Lac10g3111 758 ProSiteProfiles GRAS family profile. 374 754 IPR005202 -
Lac10g3111 758 MobiDBLite consensus disorder prediction 277 310 - -
Lac10g3111 758 MobiDBLite consensus disorder prediction 354 377 - -
Lac10g3111 758 MobiDBLite consensus disorder prediction 263 310 - -
Lac10g3111 758 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 357 753 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3111 Lac-Chr10:45491599 Lac2g1740 Lac-Chr2:16264994 1.60E-58 dispersed
Lac1g3147 Lac-Chr1:51736675 Lac10g3111 Lac-Chr10:45491599 3.20E-53 transposed
Lac4g3017 Lac-Chr4:48371850 Lac10g3111 Lac-Chr10:45491599 1.60E-15 transposed
Lac5g0961 Lac-Chr5:14555376 Lac10g3111 Lac-Chr10:45491599 1.30E-54 transposed
Lac9g1970 Lac-Chr9:39446838 Lac10g3111 Lac-Chr10:45491599 1.10E-58 transposed
Lac9g2461 Lac-Chr9:43501622 Lac10g3111 Lac-Chr10:45491599 2.30E-53 transposed
Lac10g3111 Lac-Chr10:45491599 Lac7g2743 Lac-Chr7:46582653 1.80E-158 wgd
Lac10g3111 Lac-Chr10:45491599 Lac9g2460 Lac-Chr9:43500780 1.30E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22859 PF03514 GRAS 1.00E-116 CL0063 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3111 K27753 - csv:101205887 1302.35