Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3127 ATGCTGTGTTCTTACAGAAGAGAGATGAAAAAAGCCATCTTTTTCAAGCTCGCAATCATGGCGTCTCTGCTTGTGGCTTCAGTCTCAGCTGCTTCTCAAGGTCCCAGTTTCATCTTCAATGGCTTCCAATCTAGAAATCTATCACTCGATGGCGTGGCTGTTGTTACCCCCAATGGCCTCCTGAAACTGACCAACGAGACCAGGCAAAGAAGTGGCCATGCCTTTTATCCTGATCCTGTAAATTTTGTCAATTCCTCTTATGGCGTCTCCTCTTTCTCCACAACTTTCGTCTTTGCCATTATTTCTGAGTTCCAATCTCTAAGTGGCCATGGGATTGTCTTCGTGGTGGCTCCGATGAAAGTTTTCCCTGGAGCTCGTGCAAGCCAGTATCTTGGCCTTTTTAATGAGAAAAACAATGGTAACGCAACCAACCATGTATTTGCTGTAGAGCTCGACACGATTCAGAGTACAGAGTTTAACGATATCAATGACAATCATGTTGGCATAGATATAAATGGGTTGACCTCTGAGAAAGCTGAACCTGCTGGATTTCATCCCGACGACAATGGGAAATTCAGAAATTTGACTCTTATAAGTGGCCAACCGATGCAGGTTTGGATCGAATATGATGGTATCAACAAAGAAATCAATGTCACTTTGGCCCCAATTAACATTCCCAAACCCAAAACTCCACTTTTGTCCTTCTCCCGAGACCTTTCATCTGTCATAAACAACTCCATGTTCGTCGGGTTTTCATCCTCCACTGGCTCTGTTTCAACATCTCATTATGTTTTAGGTTGGAGTTTCAGGTTAAACGGGCAAGCTCAAAGTCTTGACCTTGCCCGCCTTCCAAAGCTCCCTCGGAAAAAACAAGTATCCAAACTTTTAACTATTGGGTTGCCTTTAATTTCTGGAGGGATTGTCTTCTTGGTGATTTTAGCCATTGCTTATGTTGTCAGAAGGAAGAGGAAGTTCGCCGAGCTGCTCGAAGACTGGGAGCTTGAATATGGGCCTCACAGGTTCAAATTCAAGGACTTATACGTCGCTACAAATGGATTTAAAGAGAAAGAGCTTCTGGGTTCTGGCGGATTTGGACGAGTCTACAAAGGGGTATTACCAAAATCAAAACTTGAAATCGCTGTCAAGAGAGTTTCTCACGAATCAAGGCAGGGAATGAAGGAATTCGTGGCTGAAATCGTCAGTCTCGGGAGACTTCGTCACAGAAACCTCGTACAACTTCTAGGCTACTGCAGACGCAAAGGAGAGCTACTTCTAGTATACGATTACATGCACAATGGAAGTTTGGATAAGTACCTGTTCGGCCAGCCGAATCCCAGTCTGAATTGGAGCCAGAGGTTTCGAATCATAAAAGGAGTTGCATCAGGGCTGCTTTACCTGCACGAAGAATGGGAACAAGTCGTGATTCACAGAGATGTCAAAGCCAGTAATGTCTTGCTAGACGACGAGTTAAACGGAAGATTGGGAGATTTCGGGTTAGCAAGACTGTATGACCATGGAACAGACCCTCAAACCACACACATAGTGGGAACGCTCGGATATTTGGCTCCAGAGCACGCCAGATCCGGCCGGCCGACGACCCAGATGGATGTGTTTGCTTTTGGGGCATTTCTGCTGGAGGTGGCGACTGGAAAGAGGCCAATAGAGATTAGGGGAATGACAGAAGATGTAATATTGGTGGATTGGGTGTTTTTATGTTGGGCGAGAGGAGCCATAATCGAGGCCAGGGATCCAAACTTGGGAACAGAGTATGAAACAGAGGAGATGGAAATGGTGCTGAAACTTGGATTGTTTTGTTCTCAATCCAACCCAATGGCGAGGCCAAGCATGCGCCAAATTGTGCAGTACTTGGAAGGCGACGCTCCCATGCCGGAGATGACTTCTATCGAAACTTCAGGCGGTGGGTGTGAAAGTTTTGATGATCTTGTCATGTCCTATTCGTCTCCACTGGATAAGGCTTTCGCTCTTTCTAGTTCTTCCTTCGAGGCTTTCGCCCATTCTTCTGATGCTCAGTCTCTCCTTTCTGGTGGTCGTTGA 2055 45.84 MLCSYRREMKKAIFFKLAIMASLLVASVSAASQGPSFIFNGFQSRNLSLDGVAVVTPNGLLKLTNETRQRSGHAFYPDPVNFVNSSYGVSSFSTTFVFAIISEFQSLSGHGIVFVVAPMKVFPGARASQYLGLFNEKNNGNATNHVFAVELDTIQSTEFNDINDNHVGIDINGLTSEKAEPAGFHPDDNGKFRNLTLISGQPMQVWIEYDGINKEINVTLAPINIPKPKTPLLSFSRDLSSVINNSMFVGFSSSTGSVSTSHYVLGWSFRLNGQAQSLDLARLPKLPRKKQVSKLLTIGLPLISGGIVFLVILAIAYVVRRKRKFAELLEDWELEYGPHRFKFKDLYVATNGFKEKELLGSGGFGRVYKGVLPKSKLEIAVKRVSHESRQGMKEFVAEIVSLGRLRHRNLVQLLGYCRRKGELLLVYDYMHNGSLDKYLFGQPNPSLNWSQRFRIIKGVASGLLYLHEEWEQVVIHRDVKASNVLLDDELNGRLGDFGLARLYDHGTDPQTTHIVGTLGYLAPEHARSGRPTTQMDVFAFGAFLLEVATGKRPIEIRGMTEDVILVDWVFLCWARGAIIEARDPNLGTEYETEEMEMVLKLGLFCSQSNPMARPSMRQIVQYLEGDAPMPEMTSIETSGGGCESFDDLVMSYSSPLDKAFALSSSSFEAFAHSSDAQSLLSGGR 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45582749 45584803 - Lag0027172.1 Lac10g3127 585658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3127 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g3127 684 Gene3D Phosphorylase Kinase; domain 1 338 429 - -
Lac10g3127 684 ProSiteProfiles Protein kinase domain profile. 353 632 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3127 684 Pfam Legume lectin domain 36 284 IPR001220 GO:0030246(InterPro)
Lac10g3127 684 SMART serkin_6 353 623 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3127 684 CDD STKc_IRAK 359 625 - -
Lac10g3127 684 SUPERFAMILY Protein kinase-like (PK-like) 334 635 IPR011009 -
Lac10g3127 684 Pfam Protein kinase domain 353 621 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3127 684 FunFam Lectin-domain containing receptor kinase A4.3 338 429 - -
Lac10g3127 684 FunFam L-type lectin-domain containing receptor kinase S.4 430 636 - -
Lac10g3127 684 Gene3D - 35 283 - -
Lac10g3127 684 SUPERFAMILY Concanavalin A-like lectins/glucanases 36 289 IPR013320 -
Lac10g3127 684 ProSitePatterns Protein kinases ATP-binding region signature. 359 382 IPR017441 GO:0005524(InterPro)
Lac10g3127 684 FunFam L-type lectin-domain containing receptor kinase V.9 34 276 - -
Lac10g3127 684 PANTHER - 40 636 IPR050528 GO:0002229(PANTHER)|GO:0004675(PANTHER)|GO:0005886(PANTHER)|GO:0042742(PANTHER)
Lac10g3127 684 Gene3D Transferase(Phosphotransferase) domain 1 430 634 - -
Lac10g3127 684 CDD lectin_legume_LecRK_Arcelin_ConA 36 273 IPR001220 GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3127 Lac-Chr10:45582749 Lac1g1998 Lac-Chr1:41574633 2.30E-242 dispersed
Lac10g3127 Lac-Chr10:45582749 Lac10g3129 Lac-Chr10:45593322 1.70E-197 proximal
Lac10g3126 Lac-Chr10:45578603 Lac10g3127 Lac-Chr10:45582749 9.90E-307 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85703 PF00069 Pkinase 1.30E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3127 - - - 0.0