Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3129 ATGGCCCAACTCTCTTTCCTCTGTTTTCTCTGTTTCATCCTCTTCCTCGCCGGCCCCGCCGCATCTCAGCAGCTCTACTTCCCCGGATTCCACGACGCCGCCGCCGCCGCCGCCAACTTAACTCTCACTGACATCGCCAAGATCGAGTCCAACGGAATCCTAAAGCTCACAAACGACACCAGTCGATTACAGGGCCATGCCTTTTACACTTCCCCTGTTCGATTCAAAAACTCCTCCGACGGCAAAGCCTTTTCCTTCTCCACCGCTTTTGTCCTCGCCGTCGTCCCCGAGTACCCGACCCTCGGCGGCCATGGCCTCGCCTTCACCATTGCACCCTCCAAAAACCTCCGTGGACTTCCCAGTCAGTATTTAGGCCTTCTCAATGCCACCGATGTCGGAAACTTCTCGAACCATCTCTTCGCCGTCGAGTTCGACACCGTTCAAGATTTCGAGTTCGGCGACATCAACGACAACCACGTCGGAATCAATCTCAACAATATGGTCTCTAATGACTCCATCACCGCTTCCTATTTCGTCGACGACGGACCCATCAAACAGAATCTAACCCTAAAAAGTGGGAAGCCGGTTCAAGCTTGGATCGATTACGATTCCTCTGTAAATTCCCTCACGGTGGCGCTTTCTCCGTTCTCAACCAAACCCAAGAAGCCGATTCTGTCGTATAAAGTAGATCTCTCTCCGATTCTTCACGAGTTTATGTACGTTGGGTTCTCGGCCTCGACGGGGCTTCTTGCGAGTTCTCACTATGTATTGGGATGGAGTTTCAGTATGAATGGACCAGTCCAGTCTCTGGATCTTTCTTCTCTGCCTTCTGTTCCAGGTCCGAGGAAGAAGCACACTGGTTTCACAATTGGGGTTTCTGTTGCGGCGGTTTTGATTGTGGTAATTGCGATCTGTGTTGCTGTTTTGATCATTTGGAAGATAAAAAACGCTGACATAATCGAGGGCTGGGAGCTCGAAATCGGCCCTCATCGGTACTCTTACAAGGAGCTCAAGCAAGCGACTAAACGATTCAGGGACAGAGAGCTTCTGGGGCGCGGTGGATTTGGGAAGGTTTACAAAGGGACTTTGCCGAATTCGAAAACCCAAGTGGCTGTTAAGCGAATTTCTCATGAATCGAAACAGGGTTTGAGGGAATTCGTCTCGGAAATCGCTAGCATTGGTCGGCTCCGTCACCGGAACCTGGTTCAGTTACTGGGTTGGTGTCGCCGCCGTGGCGATCTGCTTCTTGTTTATGATTTTATGGCCAATGGGAGCTTGGATAACTACATTTTCGACGAGCCCGATGTGATTTTGAGCTGGGATCAGAGGTTTCGAATCATTAAGGGCGTCGCCTCCGGCCTTCTGTACTTGCACGAAGGCTACGAACAGGTAGTCATTCATAGAGATGTGAAGGCTAGCAATGTTCTGCTCGACAGTGAGATGAACGGGAAGCTCGGCGATTTCGGTCTCGCCCGGCTATACGAACACGGGGCGAATCCGAGCACGACTCGGGTCGTTGGAACATTAGGATATCTGGCGCCGGAGCTACCCAGAACAGGGAAAGCCACCACCAGCTCAGATGTGTATGCCTTCGGCGCACTGCTGCTGGAAGTGGTCTGCGGGCGGCGGCCGATCGACCCGAAAGCTTCGTCGGAGGAGCTGGTGCTGGTGGATTGGGTGTGGGAAAATTACAGGGAAGGAAAACTGCTGGAAGTAATGGATCCAAAATTGAAAGGGGATTTCAATGTGGCTGAGGCAGTGATGATTCTGAAACTGGGGTTGTTCTGTTCGAACGACTCGGCGGCGGCGCGGCCGAGTATGAGGCAGGTGGTGCGGTTTCTGGACGGCGAAATCGGCGTTCCCGACGAGATTTCGGCGCCGAAAGTGGTGGAAGGAGGGAAGAACGGCGAAGGGTTCGATGATTTTGTGAATTCGTTTGCTTCTTCTTCGTTTAACAAGTTCAGCACGAATTCTTCGACTGGAAATAGGGATATGGATATGAGTTTTGCTTCGTTTTCGACTTCTCCTCTTTCGCTGCTCAATGGCAGAGACTGA 2055 51.92 MAQLSFLCFLCFILFLAGPAASQQLYFPGFHDAAAAAANLTLTDIAKIESNGILKLTNDTSRLQGHAFYTSPVRFKNSSDGKAFSFSTAFVLAVVPEYPTLGGHGLAFTIAPSKNLRGLPSQYLGLLNATDVGNFSNHLFAVEFDTVQDFEFGDINDNHVGINLNNMVSNDSITASYFVDDGPIKQNLTLKSGKPVQAWIDYDSSVNSLTVALSPFSTKPKKPILSYKVDLSPILHEFMYVGFSASTGLLASSHYVLGWSFSMNGPVQSLDLSSLPSVPGPRKKHTGFTIGVSVAAVLIVVIAICVAVLIIWKIKNADIIEGWELEIGPHRYSYKELKQATKRFRDRELLGRGGFGKVYKGTLPNSKTQVAVKRISHESKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDNYIFDEPDVILSWDQRFRIIKGVASGLLYLHEGYEQVVIHRDVKASNVLLDSEMNGKLGDFGLARLYEHGANPSTTRVVGTLGYLAPELPRTGKATTSSDVYAFGALLLEVVCGRRPIDPKASSEELVLVDWVWENYREGKLLEVMDPKLKGDFNVAEAVMILKLGLFCSNDSAAARPSMRQVVRFLDGEIGVPDEISAPKVVEGGKNGEGFDDFVNSFASSSFNKFSTNSSTGNRDMDMSFASFSTSPLSLLNGRD 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45593322 45595464 - Lag0027174.1 Lac10g3129 585660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3129 684 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 283 IPR013320 -
Lac10g3129 684 Gene3D - 24 272 - -
Lac10g3129 684 Pfam Legume lectin domain 24 275 IPR001220 GO:0030246(InterPro)
Lac10g3129 684 Gene3D Phosphorylase Kinase; domain 1 329 420 - -
Lac10g3129 684 Pfam Protein kinase domain 346 552 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3129 684 CDD lectin_legume_LecRK_Arcelin_ConA 27 265 IPR001220 GO:0030246(InterPro)
Lac10g3129 684 SMART serkin_6 344 614 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3129 684 CDD STKc_IRAK 350 616 - -
Lac10g3129 684 ProSiteProfiles Protein kinase domain profile. 344 618 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3129 684 ProSitePatterns Protein kinases ATP-binding region signature. 350 373 IPR017441 GO:0005524(InterPro)
Lac10g3129 684 PANTHER - 41 636 IPR050528 GO:0005886(PANTHER)
Lac10g3129 684 FunFam L-type lectin-domain containing receptor kinase S.4 21 269 - -
Lac10g3129 684 SUPERFAMILY Protein kinase-like (PK-like) 326 628 IPR011009 -
Lac10g3129 684 Gene3D Transferase(Phosphotransferase) domain 1 421 628 - -
Lac10g3129 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g3129 684 FunFam L-type lectin-domain containing receptor kinase S.4 421 627 - -
Lac10g3129 684 FunFam L-type lectin-domain containing receptor kinase S.1 329 420 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3129 Lac-Chr10:45593322 Lac1g1991 Lac-Chr1:41493945 4.60E-214 dispersed
Lac3g2977 Lac-Chr3:47585469 Lac10g3129 Lac-Chr10:45593322 6.50E-51 dispersed
Lac10g3127 Lac-Chr10:45582749 Lac10g3129 Lac-Chr10:45593322 1.70E-197 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85704 PF00069 Pkinase 3.10E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3129 - - - 0.0