Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3152 ATGGCTGATGGTTTTCATTCCTACGACCATGTTCCTCAACAGAGCCGCCGCGACAAGCTCCGCGAACATCCCGACCGCTCCACTTTCCTCCCTTTTTACGACCCCTCCGATATTCTCTCCACCACCACCGCCGCCCCTTTCTCCGCCGCAGCCGCCGCCGCTCCTCGTTTCCAATTCCACCACCCCTTCTTCGACCCACAAATCCAATCCTCTCTCTTACCCGAAACCAACAACCCTCTTCTCTTGAACCACTGCTACGCCGCCGCCCCTGCCGACCCCTCCGCCGTCGCCTTCAAGCCGGAGCCTCTCTCCCTCTCGCTCTCCTCTCAGCCTTACCTCACCGCTCCCAATCTCAACAACATTAATATCGGCAAGGCCTTGGTCGTCCCTCTTGGCCCTTTCACTGGCTACGCTTCCATTTTGAAAGGGTCAAGGTTTTTGAAGCCAGCTCAGCAGTTGCTTGAAGAGCTTTGCGATGTCGTTGGCCATCAAGGGATCGAGCCCAAAACTGCTTCTGAGTCTGCTTTGATCGATCCTTCTTCTGATAGTTTGAGTGAATGTGGAATTGTCGACGATCCACTTGCTTGTGGTGGAGACGTTGGCGATGCTGCTCGTGGGAATAAATCTAGGCTTGTTTCTATGCTTGATGAGGTTTACAGAAAGTATAAGCAATACTATCAACAGATCCAGGAAGTAATGACATCGTTCGAGTACATCTCCGGGCTCGGGAATGCGGCGCCCTATGCTAACCAGGCTATAAAAGCCATGTACAAGCATTTCAAGTGCTTGAAAAATGCAATTCTAGATCAACTTCAATTCAATAAAAAAACTCTTGGTGACTACTGTCAAAGAGCTGTTCAGAACCCGGGATTTCTTGACCATCAGCCTGTTTGGCGACCACAACGAGGGCTACCGGAACGAGCAGTGACGGTTCTCCGTGCTTGGTTGTTCGAACATTTTTTGCATCCTTATCCTTCTGATACAGACAAGCTTATGTTGGCAAAACAGACTGGTCTGTCTCGTAGTCAGGTATCTAACTGGTTCATTAATGCAAGAGTGAGGCTGTGGAAGCCAATGGTTGAAGAAATATACATGCTTGAAACAAAGCAAACACAGAAGAATTTGCATAGAGAAGATCGAAATGCCAACCGGGCGAACGACCACCATCCACAGAACTCGCTCGCAACTGATAACCCCTCAACATCCGCCCAACAAATTCAAGACACTCCTCCCAAGCGCACCCGAAACGAGCCTCACGACATGCCCATGGGAAACCAAGACGATCCCTTGAACGTATCGTACAACTTGTCGAGCCATCCCCATGTTGGGGCAAACACAAACATGGTGGGCAACAACGGTGGAGTTTCCTTAACTCTCGGCCTTCACCAGAACAACGGCATAGGTGGCTATTCGGAACCCTTCCCTGTCGGGTTCCCTGTCGCTGCCACTCGACGTTTCGGCCTCGGAATCCAAGGGAACAGCGACGGGTACGTAATGGGTGGACATTTCGGTAGAGATGTTCTTGGAGGTCAGCTGTTACATGACTTTGTAGGATGA 1557 50.8 MADGFHSYDHVPQQSRRDKLREHPDRSTFLPFYDPSDILSTTTAAPFSAAAAAAPRFQFHHPFFDPQIQSSLLPETNNPLLLNHCYAAAPADPSAVAFKPEPLSLSLSSQPYLTAPNLNNINIGKALVVPLGPFTGYASILKGSRFLKPAQQLLEELCDVVGHQGIEPKTASESALIDPSSDSLSECGIVDDPLACGGDVGDAARGNKSRLVSMLDEVYRKYKQYYQQIQEVMTSFEYISGLGNAAPYANQAIKAMYKHFKCLKNAILDQLQFNKKTLGDYCQRAVQNPGFLDHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIYMLETKQTQKNLHREDRNANRANDHHPQNSLATDNPSTSAQQIQDTPPKRTRNEPHDMPMGNQDDPLNVSYNLSSHPHVGANTNMVGNNGGVSLTLGLHQNNGIGGYSEPFPVGFPVAATRRFGLGIQGNSDGYVMGGHFGRDVLGGQLLHDFVG 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45764467 45767749 - Lag0027197.1 Lac10g3152 585683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3152 518 MobiDBLite consensus disorder prediction 1 26 - -
Lac10g3152 518 SUPERFAMILY Homeodomain-like 300 365 IPR009057 -
Lac10g3152 518 MobiDBLite consensus disorder prediction 10 26 - -
Lac10g3152 518 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 88 393 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac10g3152 518 MobiDBLite consensus disorder prediction 382 427 - -
Lac10g3152 518 FunFam BEL1-like homeodomain protein 9 301 363 - -
Lac10g3152 518 Gene3D - 301 363 - -
Lac10g3152 518 ProSiteProfiles 'Homeobox' domain profile. 295 358 IPR001356 GO:0003677(InterPro)
Lac10g3152 518 MobiDBLite consensus disorder prediction 387 411 - -
Lac10g3152 518 Pfam Associated with HOX 140 267 IPR006563 -
Lac10g3152 518 SMART HOX_1 298 362 IPR001356 GO:0003677(InterPro)
Lac10g3152 518 Pfam Homeobox KN domain 315 354 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac10g3152 518 SMART prehox3 135 269 IPR006563 -
Lac10g3152 518 CDD homeodomain 298 359 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3152 Lac-Chr10:45764467 Lac1g1960 Lac-Chr1:41193495 3.00E-93 dispersed
Lac10g3152 Lac-Chr10:45764467 Lac7g2385 Lac-Chr7:40457944 1.00E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22861 PF07526 POX 8.40E-33 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3152 - - - 0.0