Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g3152 | ATGGCTGATGGTTTTCATTCCTACGACCATGTTCCTCAACAGAGCCGCCGCGACAAGCTCCGCGAACATCCCGACCGCTCCACTTTCCTCCCTTTTTACGACCCCTCCGATATTCTCTCCACCACCACCGCCGCCCCTTTCTCCGCCGCAGCCGCCGCCGCTCCTCGTTTCCAATTCCACCACCCCTTCTTCGACCCACAAATCCAATCCTCTCTCTTACCCGAAACCAACAACCCTCTTCTCTTGAACCACTGCTACGCCGCCGCCCCTGCCGACCCCTCCGCCGTCGCCTTCAAGCCGGAGCCTCTCTCCCTCTCGCTCTCCTCTCAGCCTTACCTCACCGCTCCCAATCTCAACAACATTAATATCGGCAAGGCCTTGGTCGTCCCTCTTGGCCCTTTCACTGGCTACGCTTCCATTTTGAAAGGGTCAAGGTTTTTGAAGCCAGCTCAGCAGTTGCTTGAAGAGCTTTGCGATGTCGTTGGCCATCAAGGGATCGAGCCCAAAACTGCTTCTGAGTCTGCTTTGATCGATCCTTCTTCTGATAGTTTGAGTGAATGTGGAATTGTCGACGATCCACTTGCTTGTGGTGGAGACGTTGGCGATGCTGCTCGTGGGAATAAATCTAGGCTTGTTTCTATGCTTGATGAGGTTTACAGAAAGTATAAGCAATACTATCAACAGATCCAGGAAGTAATGACATCGTTCGAGTACATCTCCGGGCTCGGGAATGCGGCGCCCTATGCTAACCAGGCTATAAAAGCCATGTACAAGCATTTCAAGTGCTTGAAAAATGCAATTCTAGATCAACTTCAATTCAATAAAAAAACTCTTGGTGACTACTGTCAAAGAGCTGTTCAGAACCCGGGATTTCTTGACCATCAGCCTGTTTGGCGACCACAACGAGGGCTACCGGAACGAGCAGTGACGGTTCTCCGTGCTTGGTTGTTCGAACATTTTTTGCATCCTTATCCTTCTGATACAGACAAGCTTATGTTGGCAAAACAGACTGGTCTGTCTCGTAGTCAGGTATCTAACTGGTTCATTAATGCAAGAGTGAGGCTGTGGAAGCCAATGGTTGAAGAAATATACATGCTTGAAACAAAGCAAACACAGAAGAATTTGCATAGAGAAGATCGAAATGCCAACCGGGCGAACGACCACCATCCACAGAACTCGCTCGCAACTGATAACCCCTCAACATCCGCCCAACAAATTCAAGACACTCCTCCCAAGCGCACCCGAAACGAGCCTCACGACATGCCCATGGGAAACCAAGACGATCCCTTGAACGTATCGTACAACTTGTCGAGCCATCCCCATGTTGGGGCAAACACAAACATGGTGGGCAACAACGGTGGAGTTTCCTTAACTCTCGGCCTTCACCAGAACAACGGCATAGGTGGCTATTCGGAACCCTTCCCTGTCGGGTTCCCTGTCGCTGCCACTCGACGTTTCGGCCTCGGAATCCAAGGGAACAGCGACGGGTACGTAATGGGTGGACATTTCGGTAGAGATGTTCTTGGAGGTCAGCTGTTACATGACTTTGTAGGATGA | 1557 | 50.8 | MADGFHSYDHVPQQSRRDKLREHPDRSTFLPFYDPSDILSTTTAAPFSAAAAAAPRFQFHHPFFDPQIQSSLLPETNNPLLLNHCYAAAPADPSAVAFKPEPLSLSLSSQPYLTAPNLNNINIGKALVVPLGPFTGYASILKGSRFLKPAQQLLEELCDVVGHQGIEPKTASESALIDPSSDSLSECGIVDDPLACGGDVGDAARGNKSRLVSMLDEVYRKYKQYYQQIQEVMTSFEYISGLGNAAPYANQAIKAMYKHFKCLKNAILDQLQFNKKTLGDYCQRAVQNPGFLDHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIYMLETKQTQKNLHREDRNANRANDHHPQNSLATDNPSTSAQQIQDTPPKRTRNEPHDMPMGNQDDPLNVSYNLSSHPHVGANTNMVGNNGGVSLTLGLHQNNGIGGYSEPFPVGFPVAATRRFGLGIQGNSDGYVMGGHFGRDVLGGQLLHDFVG | 518 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 45764467 | 45767749 | - | Lag0027197.1 | Lac10g3152 | 585683 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g3152 | 518 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Lac10g3152 | 518 | SUPERFAMILY | Homeodomain-like | 300 | 365 | IPR009057 | - | |
Lac10g3152 | 518 | MobiDBLite | consensus disorder prediction | 10 | 26 | - | - | |
Lac10g3152 | 518 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 88 | 393 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Lac10g3152 | 518 | MobiDBLite | consensus disorder prediction | 382 | 427 | - | - | |
Lac10g3152 | 518 | FunFam | BEL1-like homeodomain protein 9 | 301 | 363 | - | - | |
Lac10g3152 | 518 | Gene3D | - | 301 | 363 | - | - | |
Lac10g3152 | 518 | ProSiteProfiles | 'Homeobox' domain profile. | 295 | 358 | IPR001356 | GO:0003677(InterPro) | |
Lac10g3152 | 518 | MobiDBLite | consensus disorder prediction | 387 | 411 | - | - | |
Lac10g3152 | 518 | Pfam | Associated with HOX | 140 | 267 | IPR006563 | - | |
Lac10g3152 | 518 | SMART | HOX_1 | 298 | 362 | IPR001356 | GO:0003677(InterPro) | |
Lac10g3152 | 518 | Pfam | Homeobox KN domain | 315 | 354 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Lac10g3152 | 518 | SMART | prehox3 | 135 | 269 | IPR006563 | - | |
Lac10g3152 | 518 | CDD | homeodomain | 298 | 359 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g3152 | Lac-Chr10:45764467 | Lac1g1960 | Lac-Chr1:41193495 | 3.00E-93 | dispersed | |
Lac10g3152 | Lac-Chr10:45764467 | Lac7g2385 | Lac-Chr7:40457944 | 1.00E-69 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22861 | PF07526 | POX | 8.40E-33 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g3152 | - | - | - | 0.0 |