Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3167 ATGGATCCGAAAGAGGAAATGAGCCATAAGGTTGGACCAAGGCTGAGGCCGACCCTCGGCCCGCTTGTGCAGGTCGAGTTTCCTCTCCTTTGCTCGATCCTTGGAGTCTTTTGGCCGCCCCTGTTCAACTTGGTTCAACTCGAATCATCTCCTGAAAACCCTAATATGCTAACCCAGGTCACATCTTCTCAATTCATACAAATTCACCGTTGTTGTCACCTGAAGGCCAGGAGTTTTAGCTTGTGGGTTACGAAAATGGCGCCTCCGGAAGTCTCCCAGTCCGACATTGATTTGGAGCAGGGGAATCATCGGCGGTCTGTTAGCGGTAGTGAGTTGAGCGCCGACTGTAGCGTCTATTTCTCTGACGCCGATGAGGGTTCGTGTTATTCTCAGTTTTATTCGACCAACGGTGGTTCTTACGATGAGTATAGGTTTGCTTTCGTTTCTCAGCCGGAGGTTGGGGTTGTTTCGGATTCTCGGCGGGTTTCATCGGCTTCGGATCGTTCGGTGGAGGTTGAAAATGAAAATGGGATTACTGAAATTAAGGTGCATTTAGCTAAAGTAGAGAGGGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAGTCTGGAATCCCAATCGAATTGGGTTGTTCTTGCAAGGATGATTTGGCTGCTGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATTAAAGGAAATAAGACATGTGAGATTTGTCAATCCGTTGCACGAAACATTCTCGGACCACATGAGGTTGAGTCAACAGAGCAATCTAATGAATCCAACAACGCCTCCTCGACAACTGCAGTTGCTGCATCAATTCCCTCATCAGATAGCCAAAGCTTCTGGCGTGGCCATCGGTTTCTGAATTTTCTGCTTGCTTGTATGGTTGTTGAGCGTTGCTTATGGCAATGCATAGGAGAAACCCATCAACAAGCTCTGTGCTTTCTCAAGGTCCCATGTTTACTGTTGAAAGAAGAGATCATTCGAAACGACGAAGAGGCCAAACTCAAAGCATGA 1032 47.09 MDPKEEMSHKVGPRLRPTLGPLVQVEFPLLCSILGVFWPPLFNLVQLESSPENPNMLTQVTSSQFIQIHRCCHLKARSFSLWVTKMAPPEVSQSDIDLEQGNHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRFAFVSQPEVGVVSDSRRVSSASDRSVEVENENGITEIKVHLAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICQSVARNILGPHEVESTEQSNESNNASSTTAVAASIPSSDSQSFWRGHRFLNFLLACMVVERCLWQCIGETHQQALCFLKVPCLLLKEEIIRNDEEAKLKA 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45883863 45887501 - Lag0027212.1 Lac10g3167 585698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3167 343 SUPERFAMILY RING/U-box 189 247 - -
Lac10g3167 343 PANTHER ZINC FINGER, RING-CH-TYPE 121 303 - -
Lac10g3167 343 SMART ringv_2 191 244 IPR011016 GO:0008270(InterPro)
Lac10g3167 343 Pfam RING-variant domain 192 243 IPR011016 GO:0008270(InterPro)
Lac10g3167 343 ProSiteProfiles Zinc finger RING-CH-type profile. 184 250 IPR011016 GO:0008270(InterPro)
Lac10g3167 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 251 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3167 Lac-Chr10:45883863 Lac1g3424 Lac-Chr1:53716956 7.50E-16 dispersed
Lac1g1919 Lac-Chr1:40874212 Lac10g3167 Lac-Chr10:45883863 9.90E-46 wgd
Lac10g3167 Lac-Chr10:45883863 Lac7g2790 Lac-Chr7:47030481 3.60E-34 wgd
Lac10g3167 Lac-Chr10:45883863 Lac8g2911 Lac-Chr8:46234570 1.20E-50 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3167 - - - 0.0