Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3175 ATGCTTCAGATCCGGCTTAGCAAGGTTCCACAGGCCGAAGGTGGTGCTGGAGCGGTGAAGCCCTTGCCGACGGAGACTGTGACGGTCGCGTGCCCTGACCACCTTGTCCTTGCCGATCTTCCTGTTGCAAAGGGCATTGGTGCGGCTACCGCTGCTTCCACTGTCAAGTCTGTGGGTCGCAGGTCTCGCCGTCAGCTTGGAGAACGAGTTCATTTTTGTGTCAGATGCGATTTTCCCATTGCAATTTATGGGCGCCTGAGCCCTTGCGAGCATGCCTTCTGTCTTGATTGTGCAAGGAGCGATTCTATATGCTACCTCTGTGATGACCGGATTCAGAAGATTCAAACTATAAAATTGATGGAGGGGATCTTCATTTGTGCAGCCCCACACTGTCTCAAGTCTTTTCTTAAGAGGACTGAATTTGAATCTCATATACACGAGAGCCACGCTGACCTTCTTAAGCCAAATGCAGATAAGGAAGATGGGAATGAAATTGAGGCTCATAGTGCCAAACAATCTACAGTTTCTGAATCCACAGTCCGAGGTCCATCAAGACCACTCATATCTCCAGGTTCCAATTCCCAACCTCAAGAACGTGAAGAAAAATTTCATCGCCAACAATCTAGAGACCAACCCAGGTCTGGCATGCAGCAAAAGCCAACGCCAGTTTTTGGTCAGAACCAAAATAATACAGCTGAGTCTCAACAAGACAGCGGCCATTCACAAGGCTTTGATCGACATGGCCCTCATGGCCGTTTTCCCCCACAAAACTTTGACATACAGGGTAATCCACATCAGGAGTCCAGTCAGTTTTCAGAGAAACAGCAAGGAATTCTAAGCGACACTCCATATTCTCAGTACCCTCCTTTGCAATCAATTCCACCACCGAATTATGTGGTTCCAGCTAATTCAAATCCAATGTTGACTCCCCCTCTACCATTTGTTTATCCTCCTTTTCCAGTCGAGGGAGCACAACAATATTACAGTACACCCTATGAAGTGTCACGGCAAGACTCTGCAGCTGAGAACGGATCCGAGCAAGGGTCATTGCTAGGCTTTCCACCAGGTGCAGCAGGAGGAATGAATTTCTCAGCAACTTATCCGCAGTCTTGGAATACTGGACAAGCCGGGGGTCCTTATGAGCATGCTGCTGGAGGTCAAGGAATGCCTGATGCTTTTGCTAACACACCTGATTCTCAAGGAAAACATGGATTTTACCAAGGAGACTACAGACGCAGCCCTGGAGGCTTGCCTGTGAATTCTTCTGTCTCGTCCATGGCCAACAAGGGCATGGATATGGGGCATGCAGGCAATGCGATGGACTTAAGGGATGGTAAAGGTATATTGGCACCACAGCCTCTAGTACAATTGCCTCCGCCTCCACCACCCCCACCGTACTTGTCGCATAATAAGCGAGGTAAGTTTTATTCAGGAGATATGGATCATGATGGGCAAGGCCATGGATGGCAGAATGACAGCCATAGCCGAGATAGCTTTGGAAGTGGCCAAGACTGA 1515 48.84 MLQIRLSKVPQAEGGAGAVKPLPTETVTVACPDHLVLADLPVAKGIGAATAASTVKSVGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSICYLCDDRIQKIQTIKLMEGIFICAAPHCLKSFLKRTEFESHIHESHADLLKPNADKEDGNEIEAHSAKQSTVSESTVRGPSRPLISPGSNSQPQEREEKFHRQQSRDQPRSGMQQKPTPVFGQNQNNTAESQQDSGHSQGFDRHGPHGRFPPQNFDIQGNPHQESSQFSEKQQGILSDTPYSQYPPLQSIPPPNYVVPANSNPMLTPPLPFVYPPFPVEGAQQYYSTPYEVSRQDSAAENGSEQGSLLGFPPGAAGGMNFSATYPQSWNTGQAGGPYEHAAGGQGMPDAFANTPDSQGKHGFYQGDYRRSPGGLPVNSSVSSMANKGMDMGHAGNAMDLRDGKGILAPQPLVQLPPPPPPPPYLSHNKRGKFYSGDMDHDGQGHGWQNDSHSRDSFGSGQD 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45948618 45950954 + Lag0027220.1 Lac10g3175 585706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3175 504 FunFam E3 ubiquitin-protein ligase Hakai 70 124 - -
Lac10g3175 504 MobiDBLite consensus disorder prediction 210 242 - -
Lac10g3175 504 CDD RING-HC_HAKAI-like 71 120 IPR040380 -
Lac10g3175 504 ProSiteProfiles Zinc finger C2H2 type domain profile. 124 150 IPR013087 -
Lac10g3175 504 MobiDBLite consensus disorder prediction 259 287 - -
Lac10g3175 504 MobiDBLite consensus disorder prediction 474 490 - -
Lac10g3175 504 MobiDBLite consensus disorder prediction 168 196 - -
Lac10g3175 504 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 480 IPR040383 GO:0016567(PANTHER)|GO:0016567(InterPro)|GO:0030155(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)
Lac10g3175 504 MobiDBLite consensus disorder prediction 369 504 - -
Lac10g3175 504 MobiDBLite consensus disorder prediction 453 468 - -
Lac10g3175 504 ProSitePatterns Zinc finger C2H2 type domain signature. 126 149 IPR013087 -
Lac10g3175 504 MobiDBLite consensus disorder prediction 152 167 - -
Lac10g3175 504 MobiDBLite consensus disorder prediction 152 290 - -
Lac10g3175 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 124 IPR013083 -
Lac10g3175 504 ProSitePatterns Zinc finger RING-type signature. 89 98 IPR017907 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3175 K15685 - csv:101220422 856.67