Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3194 ATGGAGGGCAGAGAAGAAGACGTGAGAGTCGGAGCCAACAGGTTCGAAGAGAGGCAGCCGATCGGGACGGCGGCGCAGACCCAAAATGCGGCGAAGGACTACCGTGAGCCGCCGCCGGCGCCGCTGTTTGAGGGCGGCGAGTTAAGATCATGGTCGTTTTACAGGGCTGGGATTGCTGAGTTTGTGGCGAGTTTCTTGTTCCTTTATGTGACTGTTTTGACAGTAATGGGAGTGAACAGATCTCCCAACAAGTGCTCCACCGTTGGTGTTCAAGGCATTGCTTGGGCCTTTGGCGGCATGATCTTTGCTCTTGTTTATTGCACTGCTGGTATTTCAGGTGGTCACATAAACCCTGCCGTCACATTCGGTCTATTACTGGCAAGGAAGCTGTCACTGACAAGAGCAATCTTTTACATAATAATGCAGTGCCTAGGCGCCATCTGCGGCGCCGCCGTCGTGAAAGGCTTCGAAAAGGGACAATTCGAAAGGGGCGGCGGCGGCGCCAACACCGTCAGTGCCGGCTATTCTAAAACCGACGGCCTCGGAGCTGAAATCATGGGCACTTTTCTGCTTGTTTACACTGTCTTTTCAGCCACTGATGCAAAGCGAAATGCCCGAGATTCGCACGTTCCTATGTTGGCTCCTTTGCCGATTGGGTTTGCTGTGTTTTTGGTTCATTTGGCCACCATTCCGATCACCGGAACCGGCATTAATCCAGCCAGAAGCCTCGGCGCCGCCATCGTTTACAACCGCCACCAAGCGTGGCACGACCATTGGGTGTTCTGGGCAGGGCCGTTGATCGGGGCAGCACTGGCGGCTCTGTACCATCAGACGGTGATTAGGGCGATTCCATTCAAGTCCAAATGA 867 54.33 MEGREEDVRVGANRFEERQPIGTAAQTQNAAKDYREPPPAPLFEGGELRSWSFYRAGIAEFVASFLFLYVTVLTVMGVNRSPNKCSTVGVQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAIFYIIMQCLGAICGAAVVKGFEKGQFERGGGGANTVSAGYSKTDGLGAEIMGTFLLVYTVFSATDAKRNARDSHVPMLAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRHQAWHDHWVFWAGPLIGAALAALYHQTVIRAIPFKSK 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46090835 46093619 - Lag0027239.1 Lac10g3194 585725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3194 288 Gene3D Glycerol uptake facilitator protein. 40 287 IPR023271 -
Lac10g3194 288 FunFam Probable aquaporin PIP1-2 40 288 - -
Lac10g3194 288 CDD MIP 55 279 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g3194 288 SUPERFAMILY Aquaporin-like 48 281 IPR023271 -
Lac10g3194 288 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 287 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Lac10g3194 288 Pfam Major intrinsic protein 47 276 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g3194 288 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g3194 288 PRINTS Major intrinsic protein family signature 259 279 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g3194 288 PRINTS Major intrinsic protein family signature 219 241 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g3194 288 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g3194 288 PRINTS Major intrinsic protein family signature 134 153 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g3194 288 PRINTS Major intrinsic protein family signature 183 201 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g3194 288 ProSitePatterns MIP family signature. 115 123 IPR022357 -
Lac10g3194 288 NCBIfam MIP family channel protein 59 276 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3194 Lac-Chr10:46090835 Lac11g2078 Lac-Chr11:36652190 1.70E-138 dispersed
Lac10g3194 Lac-Chr10:46090835 Lac13g1097 Lac-Chr13:9352405 1.10E-137 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3194 K09872 - cit:102618921 501.13