Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3206 ATGAAAGGGCTTTACATTGCAATGGCTTCTTGTTGCTTTGCATTCGTGAATTGCTGTAAAGGAAATGGCAGCTCCGAGGAACCAGCAGCAGGGTTTGCTGTTACCAACAATGTACGCATGTTTTCTTACAATTCACTGAGGTCAGCAACTAGGAATTTTCATCCATCGAGCAGAATTGGAGCTGGAGGTTATGGAGTTGTCTACAAAGGAGTTTTGAGGGATGGTACCAATGTTGCAGTGAAAGCACTTTCTGCAGAATCAGCTCAGGGAACTCGTGAATTTCTAACTGAGATAACTATGATATCAAATATCAGACATCAAAATCTTGTTGAGCTGATTGGTTGTTGCGTTGAAGGCACTCATAGAATTTTGGTGTATGAATACCTTGACAACAACAGCCTAGCAAGTACTTTGCTCGGTACAATGAGTAAGCATGTCGTTCTGGATTGGCCACAGAGAGCTAAGATTTGTATTGGTACAGCTCTTGGTCTTGCATTTCTACATGAGGAAGCTGAACTGTCTGTTGTTCATAGAGATATCAAGGCTAGCAATATACTTCTTGACAGAAACTTTCATCCTAAAATAGGAGACTTTGGGTTGGCTAAACTTTTCCCGGACAATGTTACTCATGTTAGCACTCGAGTCGCCGGAACTGTTGGATATTTGGCTCCGGAGTATGCACTTTTAGGACAGTTGACGAAGAAGGTAGATGTATACAGTTTCGGCGTGCTCATGCTGGAAGTAATTAGTGGAAGTAGCAGCAGTAAAGCAGCATTCGGAGAAGAGTTGTCGATTCTCGTGGAATGGACTTGGAAATTAAAACAAGAAGGACGACTCGTGGAACTCGTTGATCCGGAACTGATCGAATATCCCAAAGCCGAGGTGATGCGTTTCATCACAGTTGCTCTGTTCTGTACCCAAGCAGCTGCAAATCAAAGGCCAAGCATGAAGCAGGTTGTGGAAATGCTTTCAAGAGAAGTGCACCTAAACGAAAAGCTATTGACAGAGCCAGGAGTATACAAAGGACACAAAACTAGGAAGTTGAATGGTGCTTCTGCAAGTTCAGAGGGATCATCATCTTCTCATAGAGATAAAGGTAAGAAAGCTATGAAGTCTTCTACTTCTTCACAACAATTTAATAGCTCAAACAGTCTGACTCAAATGCTTCCTAGGTGA 1176 42.52 MKGLYIAMASCCFAFVNCCKGNGSSEEPAAGFAVTNNVRMFSYNSLRSATRNFHPSSRIGAGGYGVVYKGVLRDGTNVAVKALSAESAQGTREFLTEITMISNIRHQNLVELIGCCVEGTHRILVYEYLDNNSLASTLLGTMSKHVVLDWPQRAKICIGTALGLAFLHEEAELSVVHRDIKASNILLDRNFHPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKVDVYSFGVLMLEVISGSSSSKAAFGEELSILVEWTWKLKQEGRLVELVDPELIEYPKAEVMRFITVALFCTQAAANQRPSMKQVVEMLSREVHLNEKLLTEPGVYKGHKTRKLNGASASSEGSSSSHRDKGKKAMKSSTSSQQFNSSNSLTQMLPR 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46198050 46200556 - Lag0027251.1 Lac10g3206 585737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3206 391 MobiDBLite consensus disorder prediction 340 391 - -
Lac10g3206 391 Pfam Protein tyrosine and serine/threonine kinase 57 323 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g3206 391 MobiDBLite consensus disorder prediction 371 391 - -
Lac10g3206 391 CDD STKc_IRAK 59 325 - -
Lac10g3206 391 Gene3D Transferase(Phosphotransferase) domain 1 129 336 - -
Lac10g3206 391 FunFam cold-responsive protein kinase 1 24 128 - -
Lac10g3206 391 SMART serkin_6 53 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3206 391 ProSitePatterns Protein kinases ATP-binding region signature. 59 81 IPR017441 GO:0005524(InterPro)
Lac10g3206 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g3206 391 ProSiteProfiles Protein kinase domain profile. 53 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3206 391 SUPERFAMILY Protein kinase-like (PK-like) 34 323 IPR011009 -
Lac10g3206 391 Gene3D Phosphorylase Kinase; domain 1 25 128 - -
Lac10g3206 391 FunFam Putative LRR receptor-like serine/threonine-protein kinase 129 335 - -
Lac10g3206 391 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 25 368 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0846 Lac-Chr10:6781326 Lac10g3206 Lac-Chr10:46198050 4.00E-116 dispersed
Lac10g3206 Lac-Chr10:46198050 Lac5g2349 Lac-Chr5:42133937 3.90E-93 dispersed
Lac10g3206 Lac-Chr10:46198050 Lac2g1158 Lac-Chr2:9264824 2.90E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85711 PF07714 PK_Tyr_Ser-Thr 5.40E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3206 - - - 0.0