Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3209 ATGACAAGTGGCCTTAAAGGATTTGCACCTGATGCTCTTCCGTGGGCTGGAGCAGAGCAAGAAAGAGGGAGAATCAAGGAGTATGAAAGCCCAAATCTAAGATGGATACACTCTCTTCATCCAACGCCCACCATTTCCCCACCAAACAGCCACCAAATTGTGGAAATTCCCCATATAACACCTCCAAATTCCAATCACCATTACATCAACCTCCCATCTCCGCCATGGCAACCACCACAAACGCCGCCGCCGCCTCCTCCTTCATCGGAACCCGCCTCCCCGTCGCCCCATCCGGGTCGGGTCGAGCGCAAGCCCGATTCTCATTTGGAAAAGGGAAACAAAAAGCCCACCGAAGAGATCGTCGAAGCCCAGCTCGGACCGCCCGCTCTGGTACCCGGGGCGGTGGCGCCGGAGTGGCTGGACGGGAGCTTGGTGGGGGACTATGGGTTCGACCCATTTGGGTTGGGGAAGCCGGCGGAGTACTTGCAGTTCGAGTTGGACTCGCTGGACCAGAACTTGGCGAAGAATGTGGCTGGCGATGTGATTGGGACTCGGTTCGAGAATGCGGATGTGAAATCGACGCCGTTTCAGCCGTACAGTGAGGTTTTTGGGTTGCAGAGGTTTCGTGAGTGCGAGCTCATCCATGGAAGGTGGGCTATGTTGGCTACGCTTGGTGCTCTCACTGTTGAATGGCTCACCGGTGTTACCTGGCAAGACGCCGGAAAGGTAGAGCTGGTAGAAGGATCCTCATATCTTGGGCAGCCACTACCATTCTCAATATCAACATTGATATGGATCGAAGTTCTGGTAATTGGCTACATTGAGTTTCAACGAAACGCCGAGCTCGATCCCGAGAAGAGGCTTTACCCCGGGGGCAAGTACTTCGATCCCCTCGGCTTGGCAGCCGATCCCGAGAAGAAGGCGACGCTTCAATTGGCCGAGATCAAGCACGCTCGTCTCGCCATGGTTGCCTTCCTCGGCTTCGCTGTTCAGGCCGCTGCCACGGGCAAAGGCCCGCTCAATAACTGGGCAACCCATCTGAGCGACCCGCTCCACACCACCATTATTGACACATTCTTCTTTTCATCCTCTTGA 1095 55.34 MTSGLKGFAPDALPWAGAEQERGRIKEYESPNLRWIHSLHPTPTISPPNSHQIVEIPHITPPNSNHHYINLPSPPWQPPQTPPPPPPSSEPASPSPHPGRVERKPDSHLEKGNKKPTEEIVEAQLGPPALVPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFENADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFFFSSS 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46217220 46220392 - Lag0027254.1 Lac10g3209 585740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3209 364 SUPERFAMILY Chlorophyll a-b binding protein 131 359 - -
Lac10g3209 364 FunFam Chlorophyll a-b binding protein, chloroplastic 183 361 - -
Lac10g3209 364 MobiDBLite consensus disorder prediction 40 116 - -
Lac10g3209 364 MobiDBLite consensus disorder prediction 72 94 - -
Lac10g3209 364 MobiDBLite consensus disorder prediction 97 116 - -
Lac10g3209 364 MobiDBLite consensus disorder prediction 40 71 - -
Lac10g3209 364 Pfam Chlorophyll A-B binding protein 136 332 IPR022796 -
Lac10g3209 364 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 111 356 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Lac10g3209 364 Gene3D Chlorophyll a/b binding protein domain 126 362 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3209 Lac-Chr10:46217220 Lac8g2422 Lac-Chr8:42322227 3.30E-38 dispersed
Lac8g1690 Lac-Chr8:34998592 Lac10g3209 Lac-Chr10:46217220 5.40E-27 transposed
Lac1g1888 Lac-Chr1:40570178 Lac10g3209 Lac-Chr10:46217220 8.10E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3209 K08915 - vvi:100266604 453.751