Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3212 ATGGATTTCGAACAAGGAACGTCGATCTTGCAAAACGGCGCCGTCAAGGGTTCGCTGAGGCACGGTCGGACGGTTCACAACATGTCGTCGTCATCGCTGCGCAAAAGGTCCGATTTGACCCTCGTTTCCAAGGTTCGTTTCGGAGGCCTCAGGCTCTTGCTTGTGAATCTCCAGGAGGTCATTTTGGGAACTAGGATTTGGATTCTTTTTCCGGCGATTCCGTTGGCCGTTTTGGCCAACTCCTTTGGTTTCGGAAGACCATGGGTTTTCGTTCTTAGCTTAATGGGCCTTGCTCCACTTGCAGAACGCCTGAGTTTTCTGACCGAACAAATCTCATACTTCACGGGCCCCACAGTTGGTGGATTACTAAATGCGACATGTGGCAATGCGACGGAGCTAATCATAGCAATATTTGCACTTAGCAAGCATAAGATTGAGTTAGTGAAGTATTCTCTTTTGGGATCCGTTCTTTCAAACCTTCTTCTTGTTCTTGGAACCTCCCTCTTCATTGGTGGCATCGTCAATCTTAATAAAGAACAAACTTATGATCGAAGACAAGCTGAGGTGAACGCGCACATGCTGTTGTTGGCGCTTTTATGCCATTCGCTTCCGATGATATTTCCTTACGCCGGAGGATCGGCTGACGTGGCCGGAGCCGGAGCGCTGCGATTGTCTAGAGCCGGTAGTATAGTAATGCTGGTGGCTTATGTCGCTTACTTGATCTTTCAGCTCTGGACTCATCGCCGATTATTTGAACCAGAAAAGGAACCGGACGAATACGACGACGTTGTGGAAGAAGCTCCGGTGATTGGAATATGGAGCGCAATGGCGTGGTTGGTGGGTTCCACCCTTCTCATTGCTCTGTTGTCTGAGTACGTGGTGGCCACAATTGAGGATGCATCAGAAACTTGGGGTTTATCAGTTGCATTCCTTAGCATAATCTTGCTACCACTGGTTGGAAATGCAGCTGAGCATGCAGGAGCTGTCATATTTGCTTACAAGAACAAATTGGACATAACTTTAGGTGTTGCTTTAGGATCTGCAACTCAAATAGCAATGTTTGTGGTTCCTTTGTGTGTAATTGTTGCTTGGGCTATGGGAATGAATATGGATCTTGATTTTAATATCCTTGAAACTGTCTCCCTTGCTCTTTCAATAATGGCTTCATCATCCATTTTACAGGATGGCACTTCTCACTACATGAAGGGATTGATTCTCCTTCTCTTCTATATTTTCATTTCAACATGTTTCTTCTTAACCAATGATGAGGTTACTATCATCAATTCCGGGTTGTCGAGAGTCCAACTAGAGTAA 1314 45.81 MDFEQGTSILQNGAVKGSLRHGRTVHNMSSSSLRKRSDLTLVSKVRFGGLRLLLVNLQEVILGTRIWILFPAIPLAVLANSFGFGRPWVFVLSLMGLAPLAERLSFLTEQISYFTGPTVGGLLNATCGNATELIIAIFALSKHKIELVKYSLLGSVLSNLLLVLGTSLFIGGIVNLNKEQTYDRRQAEVNAHMLLLALLCHSLPMIFPYAGGSADVAGAGALRLSRAGSIVMLVAYVAYLIFQLWTHRRLFEPEKEPDEYDDVVEEAPVIGIWSAMAWLVGSTLLIALLSEYVVATIEDASETWGLSVAFLSIILLPLVGNAAEHAGAVIFAYKNKLDITLGVALGSATQIAMFVVPLCVIVAWAMGMNMDLDFNILETVSLALSIMASSSILQDGTSHYMKGLILLLFYIFISTCFFLTNDEVTIINSGLSRVQLE 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46235772 46242290 - Lag0027257.1 Lac10g3212 585743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3212 437 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 18 423 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Lac10g3212 437 Pfam Sodium/calcium exchanger protein 88 245 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g3212 437 Pfam Sodium/calcium exchanger protein 275 416 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g3212 437 Gene3D - 260 417 IPR044880 -
Lac10g3212 437 Gene3D - 117 259 IPR044880 -
Lac10g3212 437 FunFam Vacuolar cation/proton exchanger 263 419 - -
Lac10g3212 437 NCBIfam calcium/proton exchanger 71 418 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3212 Lac-Chr10:46235772 Lac1g1873 Lac-Chr1:40454437 1.20E-164 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3212 K07300 - csv:101213176 655.21