Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3221 ATGGAAATGCCCTCCACCACTCCCAAAACCGTCGAGGAAATTTTCAAAGATTACGCCGGTCGCCGTGCCGCTCTTGTTCGAGCCCTCGCTCACGATGTGGATGAATTCTATGGCCTCTGTGATCCAGATAAGGAAAATTTGTGTCTATATGGACATCCCAATGAAACATGGGAAGTGGTTCTTCCAGTAGAAGAGGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATCAATTTTGCAAGAGATGGTATGAACAGAAAAGACTGGCTATCTCTAGTTGCTGTACATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATCTTGGAGCAAGGCTTAACCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGAACGGAAGCCTGTCAAAGAGAAGCCTAGTGTAGATAGTGGAAGCAGGTCACAGGGGAGCGCTAAGAGATCCAATGATGGACAGGTGAAAAGCAACCCTAAACTTGCCGAACAGAGTTGCGAGGAGGATGTCGATGAACATAGCGAAACCCTCTGCGGTAGCTGTGGTGAAAACTACAGTGCAGATGAGTTCTGGATTGGCTGTGACATCTGCGAAAGGTGGTACCACGGAAAGTGCGTAAAGATAACACCTGCTAAGGCTGATAGTATCAAACAATACAAATGTCCATCTTGCAGCATGAAGAAGGGCAGGCAGTAG 723 46.89 MEMPSTTPKTVEEIFKDYAGRRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTERKPVKEKPSVDSGSRSQGSAKRSNDGQVKSNPKLAEQSCEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVKITPAKADSIKQYKCPSCSMKKGRQ 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46329410 46331279 + Lag0027266.1 Lac10g3221 585752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3221 240 ProSiteProfiles Zinc finger PHD-type profile. 184 236 IPR019787 -
Lac10g3221 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 234 IPR013083 -
Lac10g3221 240 FunFam PHD finger alfin-like protein 179 235 - -
Lac10g3221 240 Pfam PHD-finger 187 233 IPR019787 -
Lac10g3221 240 MobiDBLite consensus disorder prediction 141 175 - -
Lac10g3221 240 Pfam Alfin 10 135 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Lac10g3221 240 SMART PHD_3 186 234 IPR001965 -
Lac10g3221 240 PANTHER CPG BINDING PROTEIN 7 239 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Lac10g3221 240 SUPERFAMILY FYVE/PHD zinc finger 176 238 IPR011011 -
Lac10g3221 240 ProSitePatterns Zinc finger PHD-type signature. 187 233 IPR019786 -
Lac10g3221 240 MobiDBLite consensus disorder prediction 146 170 - -
Lac10g3221 240 CDD PHD_AL_plant 186 236 IPR044104 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3221 K26274 - - csv:101211970 471.085
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3221 Lac-Chr10:46329410 Lac6g3087 Lac-Chr6:48395336 1.10E-85 dispersed
Lac13g1121 Lac-Chr13:9739733 Lac10g3221 Lac-Chr10:46329410 4.60E-45 transposed
Lac10g3221 Lac-Chr10:46329410 Lac13g1118 Lac-Chr13:9718867 7.00E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g250 . . . . . . . . Cmo06g00221 Cmo14g00058 . . . . . . Cpe08g01225 . . . . . . . . . . . . . . Cone3ag0428 Cone10ag0390 . . . . . Cme04g02724 . . . . . . Bma01g01801 . . . . Cma06g00227 Cma14g00064 Car06g00201 Car14g00046 Cpe03g00051 . Bhi11g01831 Tan08g2139 Cmetu08g0029 Lac10g3221 Hepe05g0086 . . Cla10g02093 Cam10g2172 Cec10g2211 Cco10g2197 Clacu10g2174 Cmu10g2914 Cre10g2315 Lsi03g02216 Csa03g03069 Chy04g02257 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac5g1806 . 1 253 Alfin-like Transcription Factor Family AT1G14510 83.4 1.4e-112 403.3
Lac6g3087 . 9 248 Alfin-like Transcription Factor Family AT1G14510 70.1 2.1e-95 346.3
Lac4g3002 . 157 404 Alfin-like Transcription Factor Family AT1G14510 65.1 8.1e-92 334.3
Lac6g0152 . 1 272 Alfin-like Transcription Factor Family AT1G14510 63.6 8.1e-92 334.3
Lac10g3221 . 8 237 Alfin-like Transcription Factor Family AT1G14510 60.8 1.8e-78 290.0
Lac13g1118 . 63 172 Alfin-like Transcription Factor Family AT1G14510 71.4 1.1e-43 174.5
Lac6g3087 . 1 250 Alfin-like Transcription Factor Family AT5G26210 75.6 6.0e-111 397.9
Lac6g0152 . 1 274 Alfin-like Transcription Factor Family AT5G26210 67.8 1.2e-103 373.6
Lac4g3002 . 157 406 Alfin-like Transcription Factor Family AT5G26210 65.7 6.5e-97 351.3
Lac5g1806 . 9 255 Alfin-like Transcription Factor Family AT5G26210 73.0 7.4e-93 337.8
Lac10g3221 . 8 239 Alfin-like Transcription Factor Family AT5G26210 58.9 4.2e-80 295.4
Lac13g1118 . 62 166 Alfin-like Transcription Factor Family AT5G26210 75.2 5.8e-45 178.7
Lac6g3087 . 1 250 Alfin-like Transcription Factor Family AT3G42790 70.9 2.9e-102 369.0
Lac6g0152 . 1 274 Alfin-like Transcription Factor Family AT3G42790 64.1 3.5e-95 345.5
Lac4g3002 . 157 406 Alfin-like Transcription Factor Family AT3G42790 63.7 1.0e-94 344.0
Lac5g1806 . 9 255 Alfin-like Transcription Factor Family AT3G42790 70.0 2.9e-89 325.9
Lac10g3221 . 8 239 Alfin-like Transcription Factor Family AT3G42790 58.8 6.0e-79 291.6
Lac13g1118 . 62 166 Alfin-like Transcription Factor Family AT3G42790 74.3 4.0e-43 172.6
Lac10g3221 . 1 240 Alfin-like Transcription Factor Family AT5G05610 75.5 2.9e-107 385.6
Lac6g3087 . 8 250 Alfin-like Transcription Factor Family AT5G05610 64.8 2.9e-91 332.4
Lac4g3002 . 166 406 Alfin-like Transcription Factor Family AT5G05610 63.6 1.2e-89 327.0
Lac6g0152 . 8 274 Alfin-like Transcription Factor Family AT5G05610 60.7 1.2e-87 320.5
Lac5g1806 . 9 255 Alfin-like Transcription Factor Family AT5G05610 62.5 1.3e-83 307.0
Lac13g1118 . 56 172 Alfin-like Transcription Factor Family AT5G05610 80.3 1.2e-52 204.1
Lac13g1121 . 1 118 Alfin-like Transcription Factor Family AT5G05610 71.4 7.6e-47 184.9
Lac10g3221 . 43 240 Alfin-like Transcription Factor Family AT3G11200 77.2 1.1e-87 320.5
Lac6g0152 . 66 274 Alfin-like Transcription Factor Family AT3G11200 65.6 2.9e-75 279.3
Lac6g3087 . 44 250 Alfin-like Transcription Factor Family AT3G11200 64.6 3.2e-74 275.8
Lac4g3002 . 200 406 Alfin-like Transcription Factor Family AT3G11200 64.5 1.2e-73 273.9
Lac5g1806 . 44 255 Alfin-like Transcription Factor Family AT3G11200 63.4 1.2e-68 257.3
Lac13g1121 . 1 118 Alfin-like Transcription Factor Family AT3G11200 69.4 6.9e-45 178.3
Lac13g1118 . 98 172 Alfin-like Transcription Factor Family AT3G11200 92.0 1.8e-37 153.7
Lac5g1806 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.7 4.4e-77 285.4
Lac6g3087 . 1 158 Alfin-like Transcription Factor Family AT2G02470 76.6 1.0e-65 247.7
Lac4g3002 . 157 314 Alfin-like Transcription Factor Family AT2G02470 74.1 6.1e-63 238.4
Lac6g0152 . 1 180 Alfin-like Transcription Factor Family AT2G02470 68.3 7.5e-61 231.5
Lac10g3221 . 8 167 Alfin-like Transcription Factor Family AT2G02470 64.2 1.2e-53 207.6
Lac13g1118 . 63 172 Alfin-like Transcription Factor Family AT2G02470 72.3 2.4e-43 173.3
Lac6g3087 . 1 164 Alfin-like Transcription Factor Family AT5G20510 77.0 3.2e-72 268.9
Lac4g3002 . 157 318 Alfin-like Transcription Factor Family AT5G20510 77.1 9.5e-69 257.3
Lac6g0152 . 1 189 Alfin-like Transcription Factor Family AT5G20510 67.4 2.8e-68 255.8
Lac5g1806 . 3 168 Alfin-like Transcription Factor Family AT5G20510 70.2 2.4e-64 242.7
Lac10g3221 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.4e-51 200.3
Lac13g1118 . 62 166 Alfin-like Transcription Factor Family AT5G20510 73.3 1.8e-43 173.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22864 PF12165 Alfin 7.20E-67 No_clan Lac TF