Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3221 ATGGAAATGCCCTCCACCACTCCCAAAACCGTCGAGGAAATTTTCAAAGATTACGCCGGTCGCCGTGCCGCTCTTGTTCGAGCCCTCGCTCACGATGTGGATGAATTCTATGGCCTCTGTGATCCAGATAAGGAAAATTTGTGTCTATATGGACATCCCAATGAAACATGGGAAGTGGTTCTTCCAGTAGAAGAGGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATCAATTTTGCAAGAGATGGTATGAACAGAAAAGACTGGCTATCTCTAGTTGCTGTACATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATCTTGGAGCAAGGCTTAACCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGAACGGAAGCCTGTCAAAGAGAAGCCTAGTGTAGATAGTGGAAGCAGGTCACAGGGGAGCGCTAAGAGATCCAATGATGGACAGGTGAAAAGCAACCCTAAACTTGCCGAACAGAGTTGCGAGGAGGATGTCGATGAACATAGCGAAACCCTCTGCGGTAGCTGTGGTGAAAACTACAGTGCAGATGAGTTCTGGATTGGCTGTGACATCTGCGAAAGGTGGTACCACGGAAAGTGCGTAAAGATAACACCTGCTAAGGCTGATAGTATCAAACAATACAAATGTCCATCTTGCAGCATGAAGAAGGGCAGGCAGTAG 723 46.89 MEMPSTTPKTVEEIFKDYAGRRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTERKPVKEKPSVDSGSRSQGSAKRSNDGQVKSNPKLAEQSCEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVKITPAKADSIKQYKCPSCSMKKGRQ 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46329410 46331279 + Lag0027266.1 Lac10g3221 585752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3221 240 ProSiteProfiles Zinc finger PHD-type profile. 184 236 IPR019787 -
Lac10g3221 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 234 IPR013083 -
Lac10g3221 240 FunFam PHD finger alfin-like protein 179 235 - -
Lac10g3221 240 Pfam PHD-finger 187 233 IPR019787 -
Lac10g3221 240 MobiDBLite consensus disorder prediction 141 175 - -
Lac10g3221 240 Pfam Alfin 10 135 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Lac10g3221 240 SMART PHD_3 186 234 IPR001965 -
Lac10g3221 240 PANTHER CPG BINDING PROTEIN 7 239 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Lac10g3221 240 SUPERFAMILY FYVE/PHD zinc finger 176 238 IPR011011 -
Lac10g3221 240 ProSitePatterns Zinc finger PHD-type signature. 187 233 IPR019786 -
Lac10g3221 240 MobiDBLite consensus disorder prediction 146 170 - -
Lac10g3221 240 CDD PHD_AL_plant 186 236 IPR044104 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3221 Lac-Chr10:46329410 Lac6g3087 Lac-Chr6:48395336 1.10E-85 dispersed
Lac13g1121 Lac-Chr13:9739733 Lac10g3221 Lac-Chr10:46329410 4.60E-45 transposed
Lac10g3221 Lac-Chr10:46329410 Lac13g1118 Lac-Chr13:9718867 7.00E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22864 PF12165 Alfin 7.20E-67 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3221 K26274 - csv:101211970 471.085