Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g3229 | ATGGAAGGGCACCATCCTCATCATCCCCTCATTCATCTCCAGCAACAGCTTCAACATCCGCCGCCGCATGTCCACCAGAGCCTCGCCGTGACCGCCGCCGATCAATCCGCCGCTGCAGCTGACAGATTCCCTCAATGGAGTATTCAAGAAACGAAGGAGTTCTTGATGATCAGAGCCGAGCTCGATCAGACTTTCATGGAGACCAAAAGAAACAAAGTCTTGTGGGAAATCACTGCCTCCAAAATGAAGGAAAAGGGTTTCAATCGCAGCGCTGAACAGTGTAAATGTAAATGGAAAAACCTCGTTACTCGTTACAAGGGTTGTGACACAATGGAGCCAGAAATTTCAAGGCAGCAATTTCCATTCTACACAGAACTAGAAGCGATTTTCGGAGGGAGAATGCAGCGATTATGGGCGGAGGCGGAGAGCGGGGGGAGTGGATCGAAGAAGAAGATGATGGCATTATCGTCGGACGAAGACGAAGAGAACGAGGACAGCGACGGGGACGGGGGCGACGGGAAGGTCGGCAATAATCGAAAGAGGAAGAAGGGTAAAGCCAACGTCGGGACCAGCGCGGGCGGGGGAAGTAGTAGTATCAATCACTTGAAAGAAATATTGGAAGATTTCATGAACCAACAAATGCAAATGGAGGTTCAATGGAGGGAAGCATTTGAAGCAAGGGAAAAAGAGAGACAAATGAGGGAAATGGAGTGGAGAAGGAACATGGAAGCTTTAGAACATGAGAGGATAATGTTGGAAAGAAGGTGGAGAGAAAGAGAAGAGCAAAGGAGAATGAGAGAAGAACTTAGGGCTGAAAAAAGAGATGCTTTAATCACAGCTTTGTTAAACAAGCTAAGAAGAGATGATCATCATATGTAG | 879 | 47.55 | MEGHHPHHPLIHLQQQLQHPPPHVHQSLAVTAADQSAAAADRFPQWSIQETKEFLMIRAELDQTFMETKRNKVLWEITASKMKEKGFNRSAEQCKCKWKNLVTRYKGCDTMEPEISRQQFPFYTELEAIFGGRMQRLWAEAESGGSGSKKKMMALSSDEDEENEDSDGDGGDGKVGNNRKRKKGKANVGTSAGGGSSSINHLKEILEDFMNQQMQMEVQWREAFEAREKERQMREMEWRRNMEALEHERIMLERRWREREEQRRMREELRAEKRDALITALLNKLRRDDHHM | 292 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 46383161 | 46384257 | + | Lag0027274.1 | Lac10g3229 | 585760 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g3229 | 292 | CDD | GT1 | 44 | 108 | - | - | |
Lac10g3229 | 292 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Lac10g3229 | 292 | FunFam | Zinc finger and SCAN domain-containing 20 | 46 | 107 | - | - | |
Lac10g3229 | 292 | Coils | Coil | 235 | 279 | - | - | |
Lac10g3229 | 292 | Pfam | Myb/SANT-like DNA-binding domain | 45 | 129 | IPR044822 | - | |
Lac10g3229 | 292 | PANTHER | FI21293P1 | 25 | 287 | - | - | |
Lac10g3229 | 292 | MobiDBLite | consensus disorder prediction | 141 | 199 | - | - | |
Lac10g3229 | 292 | ProSiteProfiles | Myb-like domain profile. | 46 | 102 | IPR001005 | - | |
Lac10g3229 | 292 | Gene3D | - | 46 | 107 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac5g2271 | Lac-Chr5:41413814 | Lac10g3229 | Lac-Chr10:46383161 | 3.40E-22 | transposed | |
Lac1g1866 | Lac-Chr1:40346144 | Lac10g3229 | Lac-Chr10:46383161 | 3.20E-41 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22865 | PF13837 | Myb_DNA-bind_4 | 2.20E-18 | CL0123 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g3229 | - | - | - | 0.0 |