Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3229 ATGGAAGGGCACCATCCTCATCATCCCCTCATTCATCTCCAGCAACAGCTTCAACATCCGCCGCCGCATGTCCACCAGAGCCTCGCCGTGACCGCCGCCGATCAATCCGCCGCTGCAGCTGACAGATTCCCTCAATGGAGTATTCAAGAAACGAAGGAGTTCTTGATGATCAGAGCCGAGCTCGATCAGACTTTCATGGAGACCAAAAGAAACAAAGTCTTGTGGGAAATCACTGCCTCCAAAATGAAGGAAAAGGGTTTCAATCGCAGCGCTGAACAGTGTAAATGTAAATGGAAAAACCTCGTTACTCGTTACAAGGGTTGTGACACAATGGAGCCAGAAATTTCAAGGCAGCAATTTCCATTCTACACAGAACTAGAAGCGATTTTCGGAGGGAGAATGCAGCGATTATGGGCGGAGGCGGAGAGCGGGGGGAGTGGATCGAAGAAGAAGATGATGGCATTATCGTCGGACGAAGACGAAGAGAACGAGGACAGCGACGGGGACGGGGGCGACGGGAAGGTCGGCAATAATCGAAAGAGGAAGAAGGGTAAAGCCAACGTCGGGACCAGCGCGGGCGGGGGAAGTAGTAGTATCAATCACTTGAAAGAAATATTGGAAGATTTCATGAACCAACAAATGCAAATGGAGGTTCAATGGAGGGAAGCATTTGAAGCAAGGGAAAAAGAGAGACAAATGAGGGAAATGGAGTGGAGAAGGAACATGGAAGCTTTAGAACATGAGAGGATAATGTTGGAAAGAAGGTGGAGAGAAAGAGAAGAGCAAAGGAGAATGAGAGAAGAACTTAGGGCTGAAAAAAGAGATGCTTTAATCACAGCTTTGTTAAACAAGCTAAGAAGAGATGATCATCATATGTAG 879 47.55 MEGHHPHHPLIHLQQQLQHPPPHVHQSLAVTAADQSAAAADRFPQWSIQETKEFLMIRAELDQTFMETKRNKVLWEITASKMKEKGFNRSAEQCKCKWKNLVTRYKGCDTMEPEISRQQFPFYTELEAIFGGRMQRLWAEAESGGSGSKKKMMALSSDEDEENEDSDGDGGDGKVGNNRKRKKGKANVGTSAGGGSSSINHLKEILEDFMNQQMQMEVQWREAFEAREKERQMREMEWRRNMEALEHERIMLERRWREREEQRRMREELRAEKRDALITALLNKLRRDDHHM 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46383161 46384257 + Lag0027274.1 Lac10g3229 585760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3229 292 CDD GT1 44 108 - -
Lac10g3229 292 MobiDBLite consensus disorder prediction 1 22 - -
Lac10g3229 292 FunFam Zinc finger and SCAN domain-containing 20 46 107 - -
Lac10g3229 292 Coils Coil 235 279 - -
Lac10g3229 292 Pfam Myb/SANT-like DNA-binding domain 45 129 IPR044822 -
Lac10g3229 292 PANTHER FI21293P1 25 287 - -
Lac10g3229 292 MobiDBLite consensus disorder prediction 141 199 - -
Lac10g3229 292 ProSiteProfiles Myb-like domain profile. 46 102 IPR001005 -
Lac10g3229 292 Gene3D - 46 107 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2271 Lac-Chr5:41413814 Lac10g3229 Lac-Chr10:46383161 3.40E-22 transposed
Lac1g1866 Lac-Chr1:40346144 Lac10g3229 Lac-Chr10:46383161 3.20E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22865 PF13837 Myb_DNA-bind_4 2.20E-18 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3229 - - - 0.0