Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3245 ATGGATATGGATATCGACGAAAATTCGGCAGCCAAAGGAAAGGAAGGGCAAGGGAAGCGCATAATGGTAATATTAGTGGGCGCACCTGGAAGCGGCAAATCCACCTTTTGCGAACTCGTAATGGGTTCCTCCTCTCGCCCTTGGGTTCGAATCTGCCAGGACACGATTGGAAATGGCAAGTCTGGAACCAAAGCACAGTGCTTGAAGAGTGCAGCCAGTGCTTTGAATGATGGAAAGAATGTATTTGTGGATAGGTGCAATCTTGAAATGGAGCAGCGTGCAGATTTTGTGAAACTTGGTGGCCCTCGAGTGGATGTACATGCTGTTGTATTAGATCTTCCTGCACAGCTCTGTATTTCTCGTTCTGTTAAGCGGACTGGTCATGAAGGGAATTTGTCAGGTGGAAAAGCTGCTGCTGTTGTGAATAAGATGCTGCAAAAGAAAGAATTGCCCAAGCTAAATGAAGGCTTCACTCGCATAACCTTTTGCCACAATGAGACTGACGTTCAATCCGCTATAGACACATACAAATCACTTGGTTTACATGATGCACTTCCAGATGGATGTTTTGGACAGAAGAACCCAGACAAGAAAGTACAGCTTGGCATAATGAAGTTCTTAAAGAAAGCAGAAAATCCTGCTAAGACGTGTTCTAGTGCCAATACCATTAAGGATTCTCCAATTTCTCCAAGTACCCAGGAAAAGAGCTACTCTTGTGATAAGAAGGAAGAGTCTGCTTGCACAATGTTGAGCAATGTCGATAAAGAGTCAAAGAAAGGTGAAAATCTAGGCGTAGGATCCTTAGAAAACAATATTGCTCAAAGTGATCCTCCAACTCTTGCATTTCCATCTATTTCAACATCAGATTTCAAGTTCAGCCATGAGAAGGCTGCTGAAATTATTGTTGAGAAGGTTGAAGAATTCATGGATAAGCTTGGAAATGCCAGACTTGTGATGGTAGACTTGAGTCATGGATCAAAGATTTTGTCTTTGGTTAAAGCTAAAGCAGCCAAGAAGAATATTACTTCGACCAAGTTTTTTACATTCGTAGGTGATATAACCAAACTCAATTCAGAAGGTGGATTGTGCTGCAATGTTATAGCCAATGCTGCAAACTGGCGACTTAAACCGGGTGGTGGTGGTGTCAATGCTGCAATTTTTACTGCTGCAGGTCCCAGTCTGGAAGTCGCAACTAAGCAACAAGCAAACTCACTTCGACCTGGCAATGCCGTGGCTGTTCAATTGCCTTCAACTTCTCCATTGTTTATCAGGGAAGGAGTAACCCATGTCATACATGTTCTTGGACCAAACATGAATCCACAGAGGCCAAATTATCTCAACAATGACTATAATGAAGGTTGCAAACTTCTTCGTGATGCTTACTCTTCCCTATTTCAAGGCTTTATTTCTATAGTAGAAGACCAATTTAAGTCAGTGAAGGGAATCCACGAACGCCTCAGCTCAGCACTTTCAGAATCACAAAAGCACTCTGAGGAAAGCCATCACAAGTTCAAGAGAGAGGATTTGCAAAATCCTGAAAGAAGCAAAAAGTGGAAAGGATCTCAAGATTCAGCTGAAGCATTAAACCAAAACAACAATAAGACTGTCCACAAAATGAGCAAGCACTGGGGCTCATGGGCACAAGCACTTTACAACACTGCAATGCATCCCGAGAAACATGGCGATGTTGTACTGGAGACATCAGATGATGTTGTCGTACTGAATGATGTTTATCCAAAAGCACGCAAGCATCTTCTTGTAGTTGCTCGGTATGAAGGCCTCGATCAACTAGCCGATGTACGTAAAGAACACCTTCCATTGTTGAAGACGATGCACGCCATGGGTTTGAAGTGGATCAATAAGTTCTTTCATGAAGATGCATCATTGGTTTTTCGCCTTGGATACCACTCGGCTCCATCCATGAGGCAACTGCACCTACATGTTGTAAGCCAGGATTTCGACTCCAGTTATCTGAAGAACAAGAAGCATTGGAATTCTTTCAACACCGATTTCTTCCGAGACTCAGTCGACGTTATTGACGAAGTCAGTAGCCATGGAAAGGCGAGCATCAAGGACGATGAGAGCTCGATGTCTATGGAGTTGCGTTGCAACAGATGCAGAAGTGCTCATCCCAACTTACCCAAATTGAAAACACATATTTCCAAATGCCAAGCGCCTTTCCCTTCCACGCTACTTGAGGGCGGGCGTTTAGTGATTGCACCAAGTAATGCTCATGAATGA 2241 43.42 MDMDIDENSAAKGKEGQGKRIMVILVGAPGSGKSTFCELVMGSSSRPWVRICQDTIGNGKSGTKAQCLKSAASALNDGKNVFVDRCNLEMEQRADFVKLGGPRVDVHAVVLDLPAQLCISRSVKRTGHEGNLSGGKAAAVVNKMLQKKELPKLNEGFTRITFCHNETDVQSAIDTYKSLGLHDALPDGCFGQKNPDKKVQLGIMKFLKKAENPAKTCSSANTIKDSPISPSTQEKSYSCDKKEESACTMLSNVDKESKKGENLGVGSLENNIAQSDPPTLAFPSISTSDFKFSHEKAAEIIVEKVEEFMDKLGNARLVMVDLSHGSKILSLVKAKAAKKNITSTKFFTFVGDITKLNSEGGLCCNVIANAANWRLKPGGGGVNAAIFTAAGPSLEVATKQQANSLRPGNAVAVQLPSTSPLFIREGVTHVIHVLGPNMNPQRPNYLNNDYNEGCKLLRDAYSSLFQGFISIVEDQFKSVKGIHERLSSALSESQKHSEESHHKFKREDLQNPERSKKWKGSQDSAEALNQNNNKTVHKMSKHWGSWAQALYNTAMHPEKHGDVVLETSDDVVVLNDVYPKARKHLLVVARYEGLDQLADVRKEHLPLLKTMHAMGLKWINKFFHEDASLVFRLGYHSAPSMRQLHLHVVSQDFDSSYLKNKKHWNSFNTDFFRDSVDVIDEVSSHGKASIKDDESSMSMELRCNRCRSAHPNLPKLKTHISKCQAPFPSTLLEGGRLVIAPSNAHE 746
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 46522002 46525305 - Lag0027290.1 Lac10g3245 585776
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3245 746 Gene3D Leucine Aminopeptidase, subunit E, domain 1 229 321 IPR043472 -
Lac10g3245 746 Gene3D Leucine Aminopeptidase, subunit E, domain 1 322 479 IPR043472 -
Lac10g3245 746 Pfam Macro domain 369 453 IPR002589 -
Lac10g3245 746 SUPERFAMILY HIT-like 533 706 IPR036265 -
Lac10g3245 746 FunFam Transcription factor bHLH140 326 473 - -
Lac10g3245 746 FunFam Transcription factor bHLH140 8 178 - -
Lac10g3245 746 FunFam aprataxin isoform X2 544 724 - -
Lac10g3245 746 ProSitePatterns HIT domain signature. 632 650 IPR019808 -
Lac10g3245 746 Gene3D - 5 178 IPR027417 -
Lac10g3245 746 PANTHER APRATAXIN-RELATED 84 743 - GO:0000012(PANTHER)|GO:0003697(PANTHER)|GO:0003725(PANTHER)|GO:0005634(PANTHER)|GO:0030983(PANTHER)|GO:0033699(PANTHER)|GO:1990165(PANTHER)
Lac10g3245 746 Gene3D - 545 726 IPR036265 -
Lac10g3245 746 MobiDBLite consensus disorder prediction 489 526 - -
Lac10g3245 746 MobiDBLite consensus disorder prediction 489 521 - -
Lac10g3245 746 Pfam C2HE / C2H2 / C2HC zinc-binding finger 668 722 IPR032566 -
Lac10g3245 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 165 IPR027417 -
Lac10g3245 746 SUPERFAMILY Macro domain-like 327 466 IPR043472 -
Lac10g3245 746 SMART YBR022w_8 345 555 IPR002589 -
Lac10g3245 746 Pfam AAA domain 22 149 - -
Lac10g3245 746 Pfam Scavenger mRNA decapping enzyme C-term binding 551 663 - -
Lac10g3245 746 ProSiteProfiles HIT domain profile. 550 658 IPR011146 GO:0003824(InterPro)
Lac10g3245 746 ProSiteProfiles Macro domain profile. 333 586 IPR002589 -
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3245 K10863 - csv:101216867 1286.94