Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac10g3245 | ATGGATATGGATATCGACGAAAATTCGGCAGCCAAAGGAAAGGAAGGGCAAGGGAAGCGCATAATGGTAATATTAGTGGGCGCACCTGGAAGCGGCAAATCCACCTTTTGCGAACTCGTAATGGGTTCCTCCTCTCGCCCTTGGGTTCGAATCTGCCAGGACACGATTGGAAATGGCAAGTCTGGAACCAAAGCACAGTGCTTGAAGAGTGCAGCCAGTGCTTTGAATGATGGAAAGAATGTATTTGTGGATAGGTGCAATCTTGAAATGGAGCAGCGTGCAGATTTTGTGAAACTTGGTGGCCCTCGAGTGGATGTACATGCTGTTGTATTAGATCTTCCTGCACAGCTCTGTATTTCTCGTTCTGTTAAGCGGACTGGTCATGAAGGGAATTTGTCAGGTGGAAAAGCTGCTGCTGTTGTGAATAAGATGCTGCAAAAGAAAGAATTGCCCAAGCTAAATGAAGGCTTCACTCGCATAACCTTTTGCCACAATGAGACTGACGTTCAATCCGCTATAGACACATACAAATCACTTGGTTTACATGATGCACTTCCAGATGGATGTTTTGGACAGAAGAACCCAGACAAGAAAGTACAGCTTGGCATAATGAAGTTCTTAAAGAAAGCAGAAAATCCTGCTAAGACGTGTTCTAGTGCCAATACCATTAAGGATTCTCCAATTTCTCCAAGTACCCAGGAAAAGAGCTACTCTTGTGATAAGAAGGAAGAGTCTGCTTGCACAATGTTGAGCAATGTCGATAAAGAGTCAAAGAAAGGTGAAAATCTAGGCGTAGGATCCTTAGAAAACAATATTGCTCAAAGTGATCCTCCAACTCTTGCATTTCCATCTATTTCAACATCAGATTTCAAGTTCAGCCATGAGAAGGCTGCTGAAATTATTGTTGAGAAGGTTGAAGAATTCATGGATAAGCTTGGAAATGCCAGACTTGTGATGGTAGACTTGAGTCATGGATCAAAGATTTTGTCTTTGGTTAAAGCTAAAGCAGCCAAGAAGAATATTACTTCGACCAAGTTTTTTACATTCGTAGGTGATATAACCAAACTCAATTCAGAAGGTGGATTGTGCTGCAATGTTATAGCCAATGCTGCAAACTGGCGACTTAAACCGGGTGGTGGTGGTGTCAATGCTGCAATTTTTACTGCTGCAGGTCCCAGTCTGGAAGTCGCAACTAAGCAACAAGCAAACTCACTTCGACCTGGCAATGCCGTGGCTGTTCAATTGCCTTCAACTTCTCCATTGTTTATCAGGGAAGGAGTAACCCATGTCATACATGTTCTTGGACCAAACATGAATCCACAGAGGCCAAATTATCTCAACAATGACTATAATGAAGGTTGCAAACTTCTTCGTGATGCTTACTCTTCCCTATTTCAAGGCTTTATTTCTATAGTAGAAGACCAATTTAAGTCAGTGAAGGGAATCCACGAACGCCTCAGCTCAGCACTTTCAGAATCACAAAAGCACTCTGAGGAAAGCCATCACAAGTTCAAGAGAGAGGATTTGCAAAATCCTGAAAGAAGCAAAAAGTGGAAAGGATCTCAAGATTCAGCTGAAGCATTAAACCAAAACAACAATAAGACTGTCCACAAAATGAGCAAGCACTGGGGCTCATGGGCACAAGCACTTTACAACACTGCAATGCATCCCGAGAAACATGGCGATGTTGTACTGGAGACATCAGATGATGTTGTCGTACTGAATGATGTTTATCCAAAAGCACGCAAGCATCTTCTTGTAGTTGCTCGGTATGAAGGCCTCGATCAACTAGCCGATGTACGTAAAGAACACCTTCCATTGTTGAAGACGATGCACGCCATGGGTTTGAAGTGGATCAATAAGTTCTTTCATGAAGATGCATCATTGGTTTTTCGCCTTGGATACCACTCGGCTCCATCCATGAGGCAACTGCACCTACATGTTGTAAGCCAGGATTTCGACTCCAGTTATCTGAAGAACAAGAAGCATTGGAATTCTTTCAACACCGATTTCTTCCGAGACTCAGTCGACGTTATTGACGAAGTCAGTAGCCATGGAAAGGCGAGCATCAAGGACGATGAGAGCTCGATGTCTATGGAGTTGCGTTGCAACAGATGCAGAAGTGCTCATCCCAACTTACCCAAATTGAAAACACATATTTCCAAATGCCAAGCGCCTTTCCCTTCCACGCTACTTGAGGGCGGGCGTTTAGTGATTGCACCAAGTAATGCTCATGAATGA | 2241 | 43.42 | MDMDIDENSAAKGKEGQGKRIMVILVGAPGSGKSTFCELVMGSSSRPWVRICQDTIGNGKSGTKAQCLKSAASALNDGKNVFVDRCNLEMEQRADFVKLGGPRVDVHAVVLDLPAQLCISRSVKRTGHEGNLSGGKAAAVVNKMLQKKELPKLNEGFTRITFCHNETDVQSAIDTYKSLGLHDALPDGCFGQKNPDKKVQLGIMKFLKKAENPAKTCSSANTIKDSPISPSTQEKSYSCDKKEESACTMLSNVDKESKKGENLGVGSLENNIAQSDPPTLAFPSISTSDFKFSHEKAAEIIVEKVEEFMDKLGNARLVMVDLSHGSKILSLVKAKAAKKNITSTKFFTFVGDITKLNSEGGLCCNVIANAANWRLKPGGGGVNAAIFTAAGPSLEVATKQQANSLRPGNAVAVQLPSTSPLFIREGVTHVIHVLGPNMNPQRPNYLNNDYNEGCKLLRDAYSSLFQGFISIVEDQFKSVKGIHERLSSALSESQKHSEESHHKFKREDLQNPERSKKWKGSQDSAEALNQNNNKTVHKMSKHWGSWAQALYNTAMHPEKHGDVVLETSDDVVVLNDVYPKARKHLLVVARYEGLDQLADVRKEHLPLLKTMHAMGLKWINKFFHEDASLVFRLGYHSAPSMRQLHLHVVSQDFDSSYLKNKKHWNSFNTDFFRDSVDVIDEVSSHGKASIKDDESSMSMELRCNRCRSAHPNLPKLKTHISKCQAPFPSTLLEGGRLVIAPSNAHE | 746 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 46522002 | 46525305 | - | Lag0027290.1 | Lac10g3245 | 585776 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac10g3245 | 746 | Gene3D | Leucine Aminopeptidase, subunit E, domain 1 | 229 | 321 | IPR043472 | - | |
| Lac10g3245 | 746 | Gene3D | Leucine Aminopeptidase, subunit E, domain 1 | 322 | 479 | IPR043472 | - | |
| Lac10g3245 | 746 | Pfam | Macro domain | 369 | 453 | IPR002589 | - | |
| Lac10g3245 | 746 | SUPERFAMILY | HIT-like | 533 | 706 | IPR036265 | - | |
| Lac10g3245 | 746 | FunFam | Transcription factor bHLH140 | 326 | 473 | - | - | |
| Lac10g3245 | 746 | FunFam | Transcription factor bHLH140 | 8 | 178 | - | - | |
| Lac10g3245 | 746 | FunFam | aprataxin isoform X2 | 544 | 724 | - | - | |
| Lac10g3245 | 746 | ProSitePatterns | HIT domain signature. | 632 | 650 | IPR019808 | - | |
| Lac10g3245 | 746 | Gene3D | - | 5 | 178 | IPR027417 | - | |
| Lac10g3245 | 746 | PANTHER | APRATAXIN-RELATED | 84 | 743 | - | GO:0000012(PANTHER)|GO:0003697(PANTHER)|GO:0003725(PANTHER)|GO:0005634(PANTHER)|GO:0030983(PANTHER)|GO:0033699(PANTHER)|GO:1990165(PANTHER) | |
| Lac10g3245 | 746 | Gene3D | - | 545 | 726 | IPR036265 | - | |
| Lac10g3245 | 746 | MobiDBLite | consensus disorder prediction | 489 | 526 | - | - | |
| Lac10g3245 | 746 | MobiDBLite | consensus disorder prediction | 489 | 521 | - | - | |
| Lac10g3245 | 746 | Pfam | C2HE / C2H2 / C2HC zinc-binding finger | 668 | 722 | IPR032566 | - | |
| Lac10g3245 | 746 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 22 | 165 | IPR027417 | - | |
| Lac10g3245 | 746 | SUPERFAMILY | Macro domain-like | 327 | 466 | IPR043472 | - | |
| Lac10g3245 | 746 | SMART | YBR022w_8 | 345 | 555 | IPR002589 | - | |
| Lac10g3245 | 746 | Pfam | AAA domain | 22 | 149 | - | - | |
| Lac10g3245 | 746 | Pfam | Scavenger mRNA decapping enzyme C-term binding | 551 | 663 | - | - | |
| Lac10g3245 | 746 | ProSiteProfiles | HIT domain profile. | 550 | 658 | IPR011146 | GO:0003824(InterPro) | |
| Lac10g3245 | 746 | ProSiteProfiles | Macro domain profile. | 333 | 586 | IPR002589 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac10g3245 | K10863 | - | csv:101216867 | 1286.94 |