Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3253 ATGAACAACACCGCCCCGCCGGCGAACATGGGCGCCGGATCTCCGCCGTGGCTGAACACCGGCGACAACTCGTGGCAAATCACAGCCTCCACCCTCGTCGGACTTCAGAGCATGCCCGGCCTCGTAATCCTCTACGCCAGCATCGTCAAGAAGAAATGGGCCGTGAATTCAGCCTTCATGGCGCTTTACGCCTTCGCCGCCGTCCTAATCTGCTGGGTCGTCGTCGGCTACCGGATGGCCTTCGGCGATCAGCTGCTTCCGCTGTGGGGCAAAGGGATTCCGGCGTTGGCTCAAAGCTACCTAATCGAGCAAGCCAACATCCCTGAAAGTGGCCACACGAGCAACGACGGCAGAGTAACGCCGAGAATCGAGCCCAATGTTCCGATGGCTTCGCTCGTGTATTTCCAGTTCACCTTCGCTGCGATTACTGTGATTTTACTTGCAGGCTCTGTTCTTGCGAGAATGAACATCAAAGCCTGGATGGCGTTCGTTCCTCTCTGGGTGATTTTCTCGTACACCGTCGGCGCCTTCACGATTTGGGGCGGAGGGTTTCTCTTTCAGTGGGGCGTCATCGATTATTCCGGCGGCTACGTGATCCATCTTTCATCGGGGATTTCTGGTCTCACCGCCGCTTACTGGGTTGGGCCGAGGATTAAGAGCGATAGAGAGAGGTTTCCGCCGAATAACGTGCTGCTGATGTTGGCCGGAGCGGGGCTGCTGTGGATGGGGTGGTCGGGATTTAACGGCGGCGCGCCGCACTCGGCGAACGTGGTGGCGTCGATAGCGGTGCTGAATACGAACGTGAGCGCGGCGACGAGCCTGCTGGTGTGGACCATTTTGGATGTGGTTTACTTTGGGAAGCCATCCGTGATTGGAGCCATTCAGGGTATGATGACTGGCTTGGCTTGCGTAACCCCTGGCGCAGGAGTTGTACAGACGTGGGCTGCTATTATAATGGGAATTCTGTCTGGGAGTATTCCATGGGTATCCATGATGGTTCTTCATAAAAAATTGAGTTTCTTGCAAAAGGCTGACGACACGCTTGGCGTATTTCACACGCACGCGGTAGCAGGGATGTTGGGCGGGCTTCTAACAGGGCTTTTGGCGGAGCCCACTCTTTGCGAACTATACCTACCGATCCCCGACACTCGCGGTGCCTTTTACGGCAAAAACGGCGGCGTTCAGTTTCTGAAACAACTCGCCGGAGCCACGTTCATAATCGGATGGAACATCGTCTCCACCACCATTATACTCCTCTTTATTCGGCTGTTTATGCCGTTGAGGATGCCGGACGAGGAACTCATGATCGGCGACGACGCCGTCCACGGCGAGGAGGCCTACGCTCTTTGGGGCGACGGCGAGAAATTCGATCCCCGAAGACACGGCAATGCGGCGGCCAGCGCCGAGGAAGGAACCGCCTCGCCTTATATCAACGGCGCCAGAGGAGTAACCATCAATTTGTGA 1464 56.56 MNNTAPPANMGAGSPPWLNTGDNSWQITASTLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVVVGYRMAFGDQLLPLWGKGIPALAQSYLIEQANIPESGHTSNDGRVTPRIEPNVPMASLVYFQFTFAAITVILLAGSVLARMNIKAWMAFVPLWVIFSYTVGAFTIWGGGFLFQWGVIDYSGGYVIHLSSGISGLTAAYWVGPRIKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPHSANVVASIAVLNTNVSAATSLLVWTILDVVYFGKPSVIGAIQGMMTGLACVTPGAGVVQTWAAIIMGILSGSIPWVSMMVLHKKLSFLQKADDTLGVFHTHAVAGMLGGLLTGLLAEPTLCELYLPIPDTRGAFYGKNGGVQFLKQLAGATFIIGWNIVSTTIILLFIRLFMPLRMPDEELMIGDDAVHGEEAYALWGDGEKFDPRRHGNAAASAEEGTASPYINGARGVTINL 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46555656 46559373 - Lag0027298.1 Lac10g3253 585784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3253 487 ProSitePatterns Ammonium transporters signature. 192 217 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lac10g3253 487 PANTHER AMMONIUM TRANSPORTER MEP2 16 458 IPR001905 GO:0005886(PANTHER)|GO:0008519(InterPro)|GO:0008519(PANTHER)|GO:0016020(InterPro)|GO:0072488(InterPro)|GO:0072488(PANTHER)
Lac10g3253 487 FunFam Ammonium transporter 8 450 - -
Lac10g3253 487 NCBIfam ammonium transporter 22 447 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lac10g3253 487 Pfam Ammonium Transporter Family 25 447 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lac10g3253 487 PRINTS Rhesus blood group protein signature 136 152 IPR002229 GO:0005886(InterPro)
Lac10g3253 487 PRINTS Rhesus blood group protein signature 262 284 IPR002229 GO:0005886(InterPro)
Lac10g3253 487 PRINTS Rhesus blood group protein signature 355 371 IPR002229 GO:0005886(InterPro)
Lac10g3253 487 PRINTS Rhesus blood group protein signature 317 335 IPR002229 GO:0005886(InterPro)
Lac10g3253 487 PRINTS Rhesus blood group protein signature 231 249 IPR002229 GO:0005886(InterPro)
Lac10g3253 487 SUPERFAMILY Ammonium transporter 17 429 - -
Lac10g3253 487 Gene3D Ammonium transporter AmtB like domains 3 450 IPR029020 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3253 Lac-Chr10:46555656 Lac1g3049 Lac-Chr1:51121888 1.40E-148 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3253 K03320 - csv:101207321 884.404