Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g3253 | ATGAACAACACCGCCCCGCCGGCGAACATGGGCGCCGGATCTCCGCCGTGGCTGAACACCGGCGACAACTCGTGGCAAATCACAGCCTCCACCCTCGTCGGACTTCAGAGCATGCCCGGCCTCGTAATCCTCTACGCCAGCATCGTCAAGAAGAAATGGGCCGTGAATTCAGCCTTCATGGCGCTTTACGCCTTCGCCGCCGTCCTAATCTGCTGGGTCGTCGTCGGCTACCGGATGGCCTTCGGCGATCAGCTGCTTCCGCTGTGGGGCAAAGGGATTCCGGCGTTGGCTCAAAGCTACCTAATCGAGCAAGCCAACATCCCTGAAAGTGGCCACACGAGCAACGACGGCAGAGTAACGCCGAGAATCGAGCCCAATGTTCCGATGGCTTCGCTCGTGTATTTCCAGTTCACCTTCGCTGCGATTACTGTGATTTTACTTGCAGGCTCTGTTCTTGCGAGAATGAACATCAAAGCCTGGATGGCGTTCGTTCCTCTCTGGGTGATTTTCTCGTACACCGTCGGCGCCTTCACGATTTGGGGCGGAGGGTTTCTCTTTCAGTGGGGCGTCATCGATTATTCCGGCGGCTACGTGATCCATCTTTCATCGGGGATTTCTGGTCTCACCGCCGCTTACTGGGTTGGGCCGAGGATTAAGAGCGATAGAGAGAGGTTTCCGCCGAATAACGTGCTGCTGATGTTGGCCGGAGCGGGGCTGCTGTGGATGGGGTGGTCGGGATTTAACGGCGGCGCGCCGCACTCGGCGAACGTGGTGGCGTCGATAGCGGTGCTGAATACGAACGTGAGCGCGGCGACGAGCCTGCTGGTGTGGACCATTTTGGATGTGGTTTACTTTGGGAAGCCATCCGTGATTGGAGCCATTCAGGGTATGATGACTGGCTTGGCTTGCGTAACCCCTGGCGCAGGAGTTGTACAGACGTGGGCTGCTATTATAATGGGAATTCTGTCTGGGAGTATTCCATGGGTATCCATGATGGTTCTTCATAAAAAATTGAGTTTCTTGCAAAAGGCTGACGACACGCTTGGCGTATTTCACACGCACGCGGTAGCAGGGATGTTGGGCGGGCTTCTAACAGGGCTTTTGGCGGAGCCCACTCTTTGCGAACTATACCTACCGATCCCCGACACTCGCGGTGCCTTTTACGGCAAAAACGGCGGCGTTCAGTTTCTGAAACAACTCGCCGGAGCCACGTTCATAATCGGATGGAACATCGTCTCCACCACCATTATACTCCTCTTTATTCGGCTGTTTATGCCGTTGAGGATGCCGGACGAGGAACTCATGATCGGCGACGACGCCGTCCACGGCGAGGAGGCCTACGCTCTTTGGGGCGACGGCGAGAAATTCGATCCCCGAAGACACGGCAATGCGGCGGCCAGCGCCGAGGAAGGAACCGCCTCGCCTTATATCAACGGCGCCAGAGGAGTAACCATCAATTTGTGA | 1464 | 56.56 | MNNTAPPANMGAGSPPWLNTGDNSWQITASTLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVVVGYRMAFGDQLLPLWGKGIPALAQSYLIEQANIPESGHTSNDGRVTPRIEPNVPMASLVYFQFTFAAITVILLAGSVLARMNIKAWMAFVPLWVIFSYTVGAFTIWGGGFLFQWGVIDYSGGYVIHLSSGISGLTAAYWVGPRIKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPHSANVVASIAVLNTNVSAATSLLVWTILDVVYFGKPSVIGAIQGMMTGLACVTPGAGVVQTWAAIIMGILSGSIPWVSMMVLHKKLSFLQKADDTLGVFHTHAVAGMLGGLLTGLLAEPTLCELYLPIPDTRGAFYGKNGGVQFLKQLAGATFIIGWNIVSTTIILLFIRLFMPLRMPDEELMIGDDAVHGEEAYALWGDGEKFDPRRHGNAAASAEEGTASPYINGARGVTINL | 487 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 46555656 | 46559373 | - | Lag0027298.1 | Lac10g3253 | 585784 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g3253 | 487 | ProSitePatterns | Ammonium transporters signature. | 192 | 217 | IPR018047 | GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro) | |
Lac10g3253 | 487 | PANTHER | AMMONIUM TRANSPORTER MEP2 | 16 | 458 | IPR001905 | GO:0005886(PANTHER)|GO:0008519(InterPro)|GO:0008519(PANTHER)|GO:0016020(InterPro)|GO:0072488(InterPro)|GO:0072488(PANTHER) | |
Lac10g3253 | 487 | FunFam | Ammonium transporter | 8 | 450 | - | - | |
Lac10g3253 | 487 | NCBIfam | ammonium transporter | 22 | 447 | IPR001905 | GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro) | |
Lac10g3253 | 487 | Pfam | Ammonium Transporter Family | 25 | 447 | IPR024041 | GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro) | |
Lac10g3253 | 487 | PRINTS | Rhesus blood group protein signature | 136 | 152 | IPR002229 | GO:0005886(InterPro) | |
Lac10g3253 | 487 | PRINTS | Rhesus blood group protein signature | 262 | 284 | IPR002229 | GO:0005886(InterPro) | |
Lac10g3253 | 487 | PRINTS | Rhesus blood group protein signature | 355 | 371 | IPR002229 | GO:0005886(InterPro) | |
Lac10g3253 | 487 | PRINTS | Rhesus blood group protein signature | 317 | 335 | IPR002229 | GO:0005886(InterPro) | |
Lac10g3253 | 487 | PRINTS | Rhesus blood group protein signature | 231 | 249 | IPR002229 | GO:0005886(InterPro) | |
Lac10g3253 | 487 | SUPERFAMILY | Ammonium transporter | 17 | 429 | - | - | |
Lac10g3253 | 487 | Gene3D | Ammonium transporter AmtB like domains | 3 | 450 | IPR029020 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g3253 | Lac-Chr10:46555656 | Lac1g3049 | Lac-Chr1:51121888 | 1.40E-148 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g3253 | K03320 | - | csv:101207321 | 884.404 |