Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3254 ATGGCTATTGCAGTTCCTTTGGCTCTTCTTTCTGTGCTTCTCCTTTCGGCTGCTCGTTCTGTGCAGTCTTCATTTCCCTACCATGGATTCAACGACACAAAACTTGATCTTGATGGAGCAACTGTTGTGAAGCCATCTGGTGCTTTGAGGCTCACCAATAGATCACAAAACGTCATCGGCCACGCATTCGATCCGACTCCATTCCAGATGTTTGATAAAAGTTCTGACTCGTTTCCGAATGTTTCATCCTTCAGCACAACTTTTGTTTTCGCAATTGATCCATCGAGCCCTGGCCAAGGTGGTTATGGCTTGGCCTTCGCCTTAGCTCCATCGACCAAATTTGCAGGTGCAGACAGTGGACACTTCTTTGGATTATTCAACTCTCACAACAATGGTAATCCTTCAAACCATATATTTGCTGTTGAATTTGACACGGTAAATGGGCATGATGACGAAAACGACACCAAAGGAAACCATGTTGGGATCAACATCAATAACATCTCATCAGTTTCATCCAAACCTGCTTCTTATTCCAAAGATGGCGATGAGGCTAATGACGAGGACTTGCAGATGGATTCTGGGTTTCCTATCATTGCTTGGATTGAATATGATGGCCCCAACAGAATTGTGAACGTCACAGTAGCTCCCTTCACAAAGCAGCCAAAGAAACCAAGAAAGCCACTCCTTTCCTATCAAATTGATCTGAAACCTGTTCTAAAGGAACAAATGTTCGTCGGCTTCTCGGCTTCGACCGGAAATAAAACTAGCTTTCATTACATTTTGGGATGGAGTTTTGCAGTGAATGGACCAGAGCCACCGTTGAATTACTCTCTCCTTCCCAACCCACCAAAAGAGCAAGATCCTCTTCCTTCACCGTCCAATTCCCACTTCAAGGTATTTATAGCAGTTTTTTCTGTCGTGGCCATCCTAGGAATCCTTTTCTTAGCTTTCTGGTTTAGAAAAATTTGGCAAACTGAGAGGCTGGAGGATTGGGAAAGAGACTGTCCTCACAGATTCAACTACAGAGATCTTTACACAGCAACAAAAGGATTCAAAAGTAGCGAGCTAATTGGAATTGGGGGGTTTGGCTCAGTATATAAAGGCCAGTTACGTTCAACTGGAATTGAGATTGCTGTGAAGAGAGTAAAAAGAAACTCAGGCCAAGGAATGAAAGAATTCGCAGCAGAAATCGAAAGCTTAGGACGATTAAGACACAAGAACTTGGTGAATCTCCAAGGATGGTGCAAAAAGAAGAACGATCTGCTCATAGTTTACGATTATATTCCAAATGGTTGCCTCTATTCACTTCTATATCATCCAAAAAACAACTATATATTGAACTGGGAACAAAGATTCAACATCCTCAAAGGAATTGCAGCAGGATTATTGTACCTTCACGAAGAGTGGGAGCAAGTGGTGATCCACCGAGATGTGAAGCCAAGCAATGTTCTAATAGACTCCGACATGAATGCTCGATTGAGCGATTTCGGTCTCGCCAGGCAATACGACCACAACGAAGCATCGCACACGACCGGCGTCGTCGGCACGATCGGCTACATAGCGCCGGAGTTGGTTCGCACAGGGAAGGCTTCGAAAAGCACCGATGTGTTTGGCTATGGAGTTCTGCTTCTGGAAGTGGCCAGTGGAAGAAAGCCTCTGGAATCGGAGCAGTTCATACTGGTGGATTGGGTGATGGAGTGCTACGAAACGGGAGAAATTCTTTACGCGGCTGATCCGAAGTTGAATTCAGTTTATGAGGTTGAAGAAATGAAGATGGTTCTGCAATTAGGGCTTCTTTGTACTCACCAGAGACCAGAAGCTCGGCCGACGATGAGACAGATCACGAGGTTCCTTCACGGCGACGATCAACTTCCGGCGGTCGACGGCTGGGATTGTTCCCAAAGTTACTCGAAATTCAACTCGAGATTGACTGAAGTGATTTCAGCAACGTCTTATCGTTCATCGTCCATTGGCGCCATTTCTTCTGGTTCCATAGACGCAGGCAGATAG 2010 45.12 MAIAVPLALLSVLLLSAARSVQSSFPYHGFNDTKLDLDGATVVKPSGALRLTNRSQNVIGHAFDPTPFQMFDKSSDSFPNVSSFSTTFVFAIDPSSPGQGGYGLAFALAPSTKFAGADSGHFFGLFNSHNNGNPSNHIFAVEFDTVNGHDDENDTKGNHVGININNISSVSSKPASYSKDGDEANDEDLQMDSGFPIIAWIEYDGPNRIVNVTVAPFTKQPKKPRKPLLSYQIDLKPVLKEQMFVGFSASTGNKTSFHYILGWSFAVNGPEPPLNYSLLPNPPKEQDPLPSPSNSHFKVFIAVFSVVAILGILFLAFWFRKIWQTERLEDWERDCPHRFNYRDLYTATKGFKSSELIGIGGFGSVYKGQLRSTGIEIAVKRVKRNSGQGMKEFAAEIESLGRLRHKNLVNLQGWCKKKNDLLIVYDYIPNGCLYSLLYHPKNNYILNWEQRFNILKGIAAGLLYLHEEWEQVVIHRDVKPSNVLIDSDMNARLSDFGLARQYDHNEASHTTGVVGTIGYIAPELVRTGKASKSTDVFGYGVLLLEVASGRKPLESEQFILVDWVMECYETGEILYAADPKLNSVYEVEEMKMVLQLGLLCTHQRPEARPTMRQITRFLHGDDQLPAVDGWDCSQSYSKFNSRLTEVISATSYRSSSIGAISSGSIDAGR 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46565625 46567634 - Lag0027299.1 Lac10g3254 585785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3254 669 CDD lectin_legume_LecRK_Arcelin_ConA 24 269 IPR001220 GO:0030246(InterPro)
Lac10g3254 669 ProSitePatterns Protein kinases ATP-binding region signature. 357 380 IPR017441 GO:0005524(InterPro)
Lac10g3254 669 SUPERFAMILY Protein kinase-like (PK-like) 335 626 IPR011009 -
Lac10g3254 669 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 284 IPR013320 -
Lac10g3254 669 Gene3D - 21 272 - -
Lac10g3254 669 Gene3D Transferase(Phosphotransferase) domain 1 428 627 - -
Lac10g3254 669 PANTHER - 29 626 IPR050528 GO:0002229(PANTHER)|GO:0004675(PANTHER)|GO:0005886(PANTHER)|GO:0042742(PANTHER)
Lac10g3254 669 Pfam Protein kinase domain 352 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3254 669 FunFam L-type lectin-domain containing receptor kinase S.4 428 629 - -
Lac10g3254 669 SMART serkin_6 351 618 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3254 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g3254 669 CDD STKc_IRAK 357 618 - -
Lac10g3254 669 ProSiteProfiles Protein kinase domain profile. 351 618 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3254 669 FunFam serine/threonine-protein kinase PBS1-like 319 427 - -
Lac10g3254 669 Pfam Legume lectin domain 23 277 IPR001220 GO:0030246(InterPro)
Lac10g3254 669 FunFam L-type lectin-domain containing receptor kinase V.9 21 272 - -
Lac10g3254 669 Gene3D Phosphorylase Kinase; domain 1 336 427 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3254 Lac-Chr10:46565625 Lac1g1998 Lac-Chr1:41574633 1.00E-157 dispersed
Lac10g3254 Lac-Chr10:46565625 Lac10g3255 Lac-Chr10:46573527 1.90E-236 tandem
Lac2g2838 Lac-Chr2:44606764 Lac10g3254 Lac-Chr10:46565625 2.60E-97 transposed
Lac2g2839 Lac-Chr2:44607978 Lac10g3254 Lac-Chr10:46565625 1.00E-119 transposed
Lac10g3254 Lac-Chr10:46565625 Lac8g1491 Lac-Chr8:32253089 1.10E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85713 PF00069 Pkinase 8.20E-52 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3254 - - - 0.0