Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3262 ATGGGAAAAAGCCACAACTTTCTGAGTGAATTTCAGGCACACCCACTTCAGTTCATGCAGATTCTTGCACCAAAAACAGTTGATCGGTGCTGTAAATCACCCAATAAGAACAGAAAATGGAAGAATCAACAATGGAGAAGCTGTTCTTCATGCTTCATTGCTCTCTTTTTTGCTCATCTTTTGGCCTTTTCTCTTCAACCGGTTGCCGGCCAGATGTGGGATGGAGTGGCTGTTACACAAGGGGATTTTCAAGCTCTTCAAGCTATAAAGCATGAACTTATTGATCTGAAAGGAGCTTTACACAGCTGGAATGGCAGTAATGGAGCTTGTTCCGGGCAGTGGGCAGGAATCAAGTGTGTGAAGGGGCAGGTCATTGCTATACAGCTTCCATGGAAGGCTCTTGCCGGCCGGATTTCCGACAGGATTGGGCAGCTCCGGGAACTTCGGAAGCTCAGCCTCCACGACAATGTGATCTCCGGCGCCATCCCTCGGTCGCTCGGGTACCTTCCGAATCTCAGAGGAATTTATCTTTTCAACAATAGATTTTCAGGTTCTGTTCCTCCTACAATTGGTAATCTTCCCCTTCTTCAAACTCTTGATTTGAGCAACAATTTGCTCAGTGGAGAAATTCCTTCTGGTCTAGCTAATTCTACCAAATTGATTAGAGTTAATCTGAGCTACAATTCATTGTCGGGTTCTATTCCTAGTAGCTTTATGCAGTCGTTTTCTCTTAGAATTCTTGCCCTTCAGCATAATAATATTTCTGGGACAGTCCCAGATTCTTGGGGTGGTTCTGGAAACAGAACTTGCCCACTTGAGGTTTTAACGCTTGATCATAATGTTATATCTGGAACAATTCCAGCTTCCTTGAGTAAATTGGAATGGCTTCAAGAGATTTCCATTAGTGAAAATAAGTTCTCTGGGGCTATACCAGGTGAAATCGGCAGGATGAAGAGGCTTCGCCTTTTCGATTTGTCGAACAACGCCATTAATGGCAGCTTCCCTTCAAGTTTCTCCAATCTCTCCTCTCTTGAGTTATTGAATGTTGAAAACAATCGCCTTGAAAGCCAGATTCCAGGAGATATTGATAGATTACATAATCTCTCAGTGGTTAAGCTTGGAAAGAATCGTTTTAGTGGAGAGATTCCTGCAAGTTTTGGGAACATTTCTGCTATTAGCCAACTTGATTTCTCAGAAAATAACTTCACGGGACAGATTCCAACATCATTGACCCGTTTGTTGAATCTAACGTCTTTCAATGTTTCTTACAACAATCTCTCTGGCCCTGTCCCAATTCTCCTATCAAATAAGTTCAATGCGAGCTCTTTTGTTGGGAACCTTCAACTGTGTGGTTTTAGTACTTCAACTCCATGTCTACCTGCATCCAATCCACAGAATATTACAACTCCATCGACTGAGGTCCCGAAACCACATCGCCGCCGCAGACTCAGTGTAAAGGACATAATTCTGATTGCGGCTGGAGCTCTGTTGGTGCTGCTACTTCTTCTTTGCTCGATTTTGCTCTGTTGTTTGTTATCAAAAAGAGCTGCTGCTAAAAAGAATGAGAAAATGACAACCAAGCAAGCTGCTACTGCGAGGAGCGTCGAGAAGGCAGCACCGGGCAGTACCGAAGTTGGGGCGGGTGAAGCCGGTGGAAAACTAGTTCATTTTGATGGGCCATTTGTTTTCACTGCTGATGATCTTCTGTGTGCAACTGCGGAGATCATGGGTAAGAGCACATATGGAACAGCATACAAAGCAACATTAGAAGATGGCAATGAAGTTGCAGTGAAAAGGTTGAGGGAAAAGACAACAAAAGGGCAGAAGGAATTCGAAACTGAAGTTGCAGGACTCGGAAAGATTCGACACCCGAATCTACTTGCTCTTAGAGCCTACTACCTAGGCCCCAAAGGAGAGAAGCTTCTTGTCTTTGATTACATGCCTAGAGGAAGCCTCTCTTCCTTCCTTCATGCTCGTGGGCCGGAAACCACTGTCGATTGGCCGACAAGGATGAAGATAGTGATCGGAATCACGCAAGGCTTGAACTACCTCCACACAGAGGAGAATCTTATTCATGGAAACCTCACGTCCAGCAACATTCTGCTGGATGATCAGACCAATGCTCGTATTGCAGATTTCGGGCTTCCTAAGCTCATGACTTCAGCTGCAGCCACAAATGTGATTGCCACTGCAGGATCACAGGGCTACAATGCACCAGAGCTAACAAAAACCAAAAAGACCACAGCAAAGACAGATGTTTACAGCCTTGGAGTCATAATATTGGAACTCTTGACAGGAAAATCTCCTGGAGAAGCCATGGATGGAATGGATTTACCTCAGTGGGTGGCATCAATTGTAAAGGAAGAGTGGACAAATGAAGTGTTTGATTTGGAGCTTATGAAAGATACACCAGATATTGGTGATGAACTGTTGAACACTTTGAAACTAGCCCTGCATTGTGTGGATCCCTCGCCAGCAGCTCGGCCCGACGTTCAGCAAATTCTACAGCAACTGGAGGAAATCAAGGCCTCTACTTCCGGTGACGATGGTGCCAAAAATCAACCAGCAAATGAATAA 2577 44.66 MGKSHNFLSEFQAHPLQFMQILAPKTVDRCCKSPNKNRKWKNQQWRSCSSCFIALFFAHLLAFSLQPVAGQMWDGVAVTQGDFQALQAIKHELIDLKGALHSWNGSNGACSGQWAGIKCVKGQVIAIQLPWKALAGRISDRIGQLRELRKLSLHDNVISGAIPRSLGYLPNLRGIYLFNNRFSGSVPPTIGNLPLLQTLDLSNNLLSGEIPSGLANSTKLIRVNLSYNSLSGSIPSSFMQSFSLRILALQHNNISGTVPDSWGGSGNRTCPLEVLTLDHNVISGTIPASLSKLEWLQEISISENKFSGAIPGEIGRMKRLRLFDLSNNAINGSFPSSFSNLSSLELLNVENNRLESQIPGDIDRLHNLSVVKLGKNRFSGEIPASFGNISAISQLDFSENNFTGQIPTSLTRLLNLTSFNVSYNNLSGPVPILLSNKFNASSFVGNLQLCGFSTSTPCLPASNPQNITTPSTEVPKPHRRRRLSVKDIILIAAGALLVLLLLLCSILLCCLLSKRAAAKKNEKMTTKQAATARSVEKAAPGSTEVGAGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSTYGTAYKATLEDGNEVAVKRLREKTTKGQKEFETEVAGLGKIRHPNLLALRAYYLGPKGEKLLVFDYMPRGSLSSFLHARGPETTVDWPTRMKIVIGITQGLNYLHTEENLIHGNLTSSNILLDDQTNARIADFGLPKLMTSAAATNVIATAGSQGYNAPELTKTKKTTAKTDVYSLGVIILELLTGKSPGEAMDGMDLPQWVASIVKEEWTNEVFDLELMKDTPDIGDELLNTLKLALHCVDPSPAARPDVQQILQQLEEIKASTSGDDGAKNQPANE 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46608228 46610979 - Lag0027307.1 Lac10g3262 585793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3262 858 SUPERFAMILY L domain-like 106 450 - -
Lac10g3262 858 Pfam Leucine Rich Repeat 220 239 IPR001611 GO:0005515(InterPro)
Lac10g3262 858 Pfam Leucine Rich Repeat 272 293 IPR001611 GO:0005515(InterPro)
Lac10g3262 858 Pfam Leucine Rich Repeat 196 216 IPR001611 GO:0005515(InterPro)
Lac10g3262 858 Pfam Leucine Rich Repeat 415 436 IPR001611 GO:0005515(InterPro)
Lac10g3262 858 Pfam Leucine Rich Repeat 243 263 IPR001611 GO:0005515(InterPro)
Lac10g3262 858 Pfam Leucine Rich Repeat 394 413 IPR001611 GO:0005515(InterPro)
Lac10g3262 858 Pfam Leucine Rich Repeat 171 193 IPR001611 GO:0005515(InterPro)
Lac10g3262 858 Gene3D Transferase(Phosphotransferase) domain 1 648 855 - -
Lac10g3262 858 SMART LRR_typ_2 193 217 IPR003591 -
Lac10g3262 858 SMART LRR_typ_2 317 340 IPR003591 -
Lac10g3262 858 SMART LRR_typ_2 341 365 IPR003591 -
Lac10g3262 858 SMART LRR_typ_2 145 169 IPR003591 -
Lac10g3262 858 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 80 233 - -
Lac10g3262 858 Gene3D Phosphorylase Kinase; domain 1 576 647 - -
Lac10g3262 858 SUPERFAMILY Protein kinase-like (PK-like) 574 842 IPR011009 -
Lac10g3262 858 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 271 338 - -
Lac10g3262 858 Gene3D Ribonuclease Inhibitor 334 459 IPR032675 -
Lac10g3262 858 CDD STKc_IRAK 576 841 - -
Lac10g3262 858 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 283 845 IPR052451 -
Lac10g3262 858 FunFam Pollen receptor-like kinase 1 647 852 - -
Lac10g3262 858 FunFam Leucine-rich repeat receptor-like protein kinase 556 646 - -
Lac10g3262 858 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 339 458 - -
Lac10g3262 858 Pfam Leucine rich repeat 296 354 IPR001611 GO:0005515(InterPro)
Lac10g3262 858 ProSiteProfiles Protein kinase domain profile. 570 841 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3262 858 Gene3D Ribonuclease Inhibitor 80 239 IPR032675 -
Lac10g3262 858 Gene3D Ribonuclease Inhibitor 240 333 IPR032675 -
Lac10g3262 858 Pfam Protein tyrosine and serine/threonine kinase 574 838 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g3262 858 MobiDBLite consensus disorder prediction 839 858 - -
Lac10g3262 858 Pfam Leucine rich repeat N-terminal domain 81 119 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3262 Lac-Chr10:46608228 Lac13g1198 Lac-Chr13:10665925 3.80E-165 dispersed
Lac10g3255 Lac-Chr10:46573527 Lac10g3262 Lac-Chr10:46608228 1.20E-38 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85715 PF07714 PK_Tyr_Ser-Thr 5.60E-41 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3262 - - - 0.0