Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3270 ATGAATAACATAAACCAAGCGATAAATGCACTCGCTGGCGGATCTTCTGACAACAGAACCAATAATTTCGCCATGGAAGCTCCGAAATTCAAGTCTCTTCAACCTCCTTCTTTCCCCTTGTCTCCTTCTTCTTACCTCTCCGCTTTCTCTTCTGGTTTAAGCCCCACTGAGCTTCTCAATTCCCCTCTCCTCTTCTCCTTTGGTGTTTTTCCCTCTCCCACTACTGGTGCCTTGAACTCGAGAAATGATTTCGATGGTGGTGAGCAGCAAGAAGAAATGAAGGGCGATTTCAAAAATTACTCTGATTCTTTGTTTAACCCTCAAACAGGATCCTCTGTTTCGTCTTATTTTCAGTCGTCTTCTTCCCCACTGAATCCAGGCGGTTTGTCGTGTGATGAAAGTGGAGCGAAATCTGAACTTGTTGCGTCGGAAATGGCGGCAGCTCAACGGAAGCAGATTTCTCAGGTGCCTCTTTACAACAGAGAACAGCATAAATCAGAGAACGATGGATACAACTGGAGAAAATATGGGCAAAAACAAGTGAAAGGAAGCGAAAATCCTCGTAGTTATTACAAGTGCACTTTTCCGAGCTGCCCAACGAAGAAGAAAGTTGAAAGATCTTTAGATGGGCAGATTACTGAGATTGTTTATAAGGGAAGCCATAATCACGGCAAGCCACAGCCGACGAGACGGTCCGGTGGCTCCGCCGTTTATGATCTTCCGGCCGCGGTGGAATCCGCCGTGCTGCAGGAGGATTCGTCTGTCTCGGTCGGGGATGAAGAATTGGAACCCAATTCGCCGTTTAGCAACTCGGTGGACGACAATGAAAATGAACCGGAAGCTAAAAGATGGAAAGGGGAAAATGAAAATGAGGGATTTTCTGGAGGGGGAAGCAGAACAGTGAAAGAGCCAAGAATTGTTGTTCAAACAACGAGTGAAATTGACATATTGCCTGACGGCTATAGATGGAGGAAATACGGACAAAAAGTTGTCAAAGGAAATCCAAATCCCAGGAGCTACTACAAATGCACATCTTTAGGTTGCCCTGTGCGGAAACACATCGAGCGGGCGGCTAATGACATGAGGGCCGTGATCACCACCTACGAAGGCAAGCACAACCATGAAGTTCCGGCGGCACGCGGCAGCGGCGGTGGCGGCTACAATGCCATCAATCGACCTGTGCCAACCAACATCCCGATGCCGGTGAGGCCGTCTGCCGTCGCCAGCCACTCTTTCCCGGCAAACTTCCCGGCAAACTTCCGGCCAGCAAATTTACCCATCTCAGAAATGGGAGCACAAGCACCATTCGCATTTCAAACATCACAAGGAGTGCACCCAAGTTTTCAAGTTTCAGGATTTGGATCGGCAGCCAAAGAAGAAACCAAAGATGACATATTCTTCAACTCATTTCTATCTTAG 1419 47.78 MNNINQAINALAGGSSDNRTNNFAMEAPKFKSLQPPSFPLSPSSYLSAFSSGLSPTELLNSPLLFSFGVFPSPTTGALNSRNDFDGGEQQEEMKGDFKNYSDSLFNPQTGSSVSSYFQSSSSPLNPGGLSCDESGAKSELVASEMAAAQRKQISQVPLYNREQHKSENDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHGKPQPTRRSGGSAVYDLPAAVESAVLQEDSSVSVGDEELEPNSPFSNSVDDNENEPEAKRWKGENENEGFSGGGSRTVKEPRIVVQTTSEIDILPDGYRWRKYGQKVVKGNPNPRSYYKCTSLGCPVRKHIERAANDMRAVITTYEGKHNHEVPAARGSGGGGYNAINRPVPTNIPMPVRPSAVASHSFPANFPANFRPANLPISEMGAQAPFAFQTSQGVHPSFQVSGFGSAAKEETKDDIFFNSFLS 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46668075 46670396 + Lag0027315.1 Lac10g3270 585801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3270 472 Gene3D WRKY domain 304 370 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g3270 472 FunFam WRKY transcription factor 33 304 370 - -
Lac10g3270 472 FunFam WRKY transcription factor 153 227 - -
Lac10g3270 472 MobiDBLite consensus disorder prediction 249 299 - -
Lac10g3270 472 Gene3D WRKY domain 153 227 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g3270 472 ProSiteProfiles WRKY domain profile. 312 377 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g3270 472 Pfam WRKY DNA -binding domain 319 375 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g3270 472 Pfam WRKY DNA -binding domain 168 223 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g3270 472 SUPERFAMILY WRKY DNA-binding domain 309 377 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g3270 472 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 115 381 IPR044810 GO:0003700(InterPro)
Lac10g3270 472 SUPERFAMILY WRKY DNA-binding domain 163 226 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g3270 472 MobiDBLite consensus disorder prediction 249 274 - -
Lac10g3270 472 SMART WRKY_cls 317 376 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g3270 472 SMART WRKY_cls 167 225 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g3270 472 MobiDBLite consensus disorder prediction 275 289 - -
Lac10g3270 472 ProSiteProfiles WRKY domain profile. 168 226 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3270 Lac-Chr10:46668075 Lac9g2348 Lac-Chr9:42749885 6.20E-85 dispersed
Lac10g3270 Lac-Chr10:46668075 Lac7g2888 Lac-Chr7:47981406 1.80E-89 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22866 PF03106 WRKY 9.40E-25 CL0274 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3270 K13424 - csv:101205651 718.383