Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3297 ATGAGTTGTAACGAGAAGAATAGAGGGGGAGATGATAGGGAAACCGAACAGCCAGTTTTGAGGAACTCTGTTGAGGCAGAACGGAGACCGGTCATCCAAAACGGATCCATAACGGCCCAACAGTTGACGATAGATGATAATCTTCTCGTTGACCCAAAATTACTGTTTATTGGATCGAAGATTGGCGAAGGTGCCCATGGAAAGGTTTATGAAGGCAGGTACCGGAACCAAATTGTGGCCATTAAAGTTCTCCATCGAGGGAGTACTCCAGAAGAAAGGGCATCACTTGAGAATCGCTTTGCCCGTGAAGTTAATATGATGTCTCGAGTAAAACATGAAAATCTTGTCAAGTTTATTGGAGCTTGTAAAGAACCTCTAATGGTGATAGTTACAGAGCTATTACCAGGAATGTCACTCAGGAAGTATCTGACGAGTAATCGTAAGCAACAGCTGGACCCTCGGATGGCAATTAACTTTGCTTTGGATGTTGCTCGTGCTATGGATTGTCTACATGCCAATGGGATTATACATAGAGATCTGAAACCTGACAATTTGTTGCTTACGGCAAATCAAAGGTCTGTGAAGCTTGCAGACTTTGGACTTGCTAGAGAAGAATCTGTGACTGAGATGATGACTGCAGAAACAGGGACCTATCGCTGGATGGCTCCTGAGTTGTATAGCACTGTGACATTGCGCCAGGGAGAGAAGAAGCATTACAACAACAAGGTCGATGTATACAGCTTTGGAATTGTCTTATGGGAACTCTTGACCAACCGAATGCCATTTGAAGGGATGTCCAATTTGCAAGCTGCATATGCTGCTGCTTTCAAGCAAGAGAGACCTAGTATTCCAGGCGACATACCTCCCAATCTAGCATTTATAGTGCAGTCGTGTTGGGTTGAAGATCCTAACATGAGGCCGAGCTTCAGCCAGATCATCCGCATGCTTAACGAATATCTGTTTACACTCCCACCTCCTTCACCATCTTCACCAGCATCCAATACAACAGAGACAGCAACGACTAGCAATGGTGCTATTACCGAGTTCTCTGCTCGTGCAAGAGGAAAGTTTGGATTCCTTCGCCAACTATTTGCTGCTAAGAAGGCTAAGAACTCACAATAA 1122 44.65 MSCNEKNRGGDDRETEQPVLRNSVEAERRPVIQNGSITAQQLTIDDNLLVDPKLLFIGSKIGEGAHGKVYEGRYRNQIVAIKVLHRGSTPEERASLENRFAREVNMMSRVKHENLVKFIGACKEPLMVIVTELLPGMSLRKYLTSNRKQQLDPRMAINFALDVARAMDCLHANGIIHRDLKPDNLLLTANQRSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPGDIPPNLAFIVQSCWVEDPNMRPSFSQIIRMLNEYLFTLPPPSPSSPASNTTETATTSNGAITEFSARARGKFGFLRQLFAAKKAKNSQ 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46829773 46833365 + Lag0027342.1 Lac10g3297 585828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3297 373 SUPERFAMILY Protein kinase-like (PK-like) 54 337 IPR011009 -
Lac10g3297 373 Pfam Protein tyrosine and serine/threonine kinase 57 316 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g3297 373 FunFam Kinase suppressor of Ras 1 44 134 - -
Lac10g3297 373 MobiDBLite consensus disorder prediction 1 26 - -
Lac10g3297 373 ProSiteProfiles Protein kinase domain profile. 55 320 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3297 373 ProSitePatterns Protein kinases ATP-binding region signature. 61 82 IPR017441 GO:0005524(InterPro)
Lac10g3297 373 PANTHER SERINE-THREONINE PROTEIN KINASE 49 318 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lac10g3297 373 SMART serkin_6 55 320 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3297 373 MobiDBLite consensus disorder prediction 1 23 - -
Lac10g3297 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g3297 373 Gene3D Phosphorylase Kinase; domain 1 43 134 - -
Lac10g3297 373 CDD STKc_MAP3K-like 61 316 - -
Lac10g3297 373 Gene3D Transferase(Phosphotransferase) domain 1 138 347 - -
Lac10g3297 373 FunFam serine/threonine-protein kinase HT1 136 338 - -
Lac10g3297 373 MobiDBLite consensus disorder prediction 326 345 - -
Lac10g3297 373 PRINTS Tyrosine kinase catalytic domain signature 169 187 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g3297 373 PRINTS Tyrosine kinase catalytic domain signature 243 265 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g3297 373 PRINTS Tyrosine kinase catalytic domain signature 287 309 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g3297 373 PRINTS Tyrosine kinase catalytic domain signature 131 144 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3297 Lac-Chr10:46829773 Lac3g0141 Lac-Chr3:987103 1.60E-115 dispersed
Lac10g3297 Lac-Chr10:46829773 Lac1g3168 Lac-Chr1:51859632 1.10E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85716 PF07714 PK_Tyr_Ser-Thr 3.30E-62 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3297 - - - 0.0