Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3307 ATGCTTTTCAAACTATTCTTCCTCCTTCTTATCTTAGCTCCTGCTTCCGTTTATGCCTTGGACACTGTTTTCAACGATGACGTTCTGGGGTTGATAGTATTTAAAGCTGGCCTTCGAGATCCCATGGCTAAACTCCTCACATGGAATGAAGACGATGAAAATCCCTGCAACTGGTTTGGTGTCAAATGCAATCCTAAAACCAATAGGGTCTCTGAGCTCGTCCTTGATGGATTCTCTTTGTCTGGCCACATCGATCGTGGACTCCTCAGGCTGCAATTCCTTCAAATACTCTCACTTGCCAACAACAACTTCACAGGCACTATTAACTCTGCTCTTGCTCATCTTACAAATTTGCAAGTTATTGATTTGAGTGACAACAGTTTATCTGGACCCATTCCCGAACAACTTTTCCTGCAATGTGGCTCTATAAGAGTTATTTCATTTGCCAGAAACAACCTCACAGGAAATATCCCTCAATCCTTAACCTCTTGCTTCTCTCTGGAGGTTCTCAACTTCTCCTCCAACCACCTCTCTGGGAAATTGCCTTCTGGGTTGTGGTATTTAAGGGGACTTCAGTCTCTGGATTTCTCAGACAACTTGCTTGAGGGGCAGATTCCTCCTGGAATTCAAAATTTATACGATTTGAGATTTGTTAACCTACAGAAGAATCGATTCTCTGGAAGGCTTCCTGAGGATATTGGTGGCTGCTTGCTTTTAAAATCAATCGATTTTAGTGAGAATATCCTTTCTGGGGGTCTTCCGGAGTCAATGCAGATGCTCAGTTCTTGCACTTATCTGAATTTACGAGGAAATTCTCTCACGGGTGAAGTCCCTCGTTGGATTGGGGAACTCAAAAATCTTGAGACTTTAGATCTTTCTACCAATAACTTTTCTGGTCAGGTACCGAGTTCAATAGGCAACCTCCAATTGCTGAAGAAGTTTAATGTATCCATGAACTATTTTACTGGAAACTTGCCAGAATCCATGGCATATTGTAATAGCCTCTTGAGTATTGATGCTAGCCACAATCATTTGACTGGCAGTCTCCCTTCATGGATTTTTAGGGCAGTTATGCCAAGTGTTCCACTTTCTTCCTACAGACTGGAAGAAAACCTTTCATTTCCAACCTCTTTTGACGGTCTTCAAGTTTTGGATTTATCTTCAAATGTTTTCTCTGGTCACATTCCATCAAATGTTGGAGAACTTAGTAACTTGCAGTTGCTGAATATATCAAGAAACCATCTCGTGGGTTCTATTCCAGGGAGCATCGGTGAACTAAAATCAGTATATGCTCTTGACTTCAGTGACAATCAATTAAATGGAAGTATTCCTGCTGAAATTGGAGGAGCTATCTCACTCAAGGATTTGAGGCTGGAGAAGAACTTCCTCACTGGGGAAATTCCAAACAAGATTGACAAATGCTCGTTGTTAACATCATTGATTCTTTCTCACAACAACCTCACAGGCTCAATTCCTGCTGCCGTTGCGAATCTCTCCAACCTTGAAAACGTAGACTTATCTTTCAACAAACTGTCCGGAAGCCTGCCCAAGGAGCTGACTAATCTTTCCCACCTCCTCTCCTTCAACATCTCCCACAATCATCTTGAGGGAGAACTTCCAGTTGGGGGCTTCTTCAACACTATATCTCCCTTGTCTATATCACATAATCCATCTCTTTGTGGTGCTGTTGTCAATAGGTCCTGTCCCTCCGTGCATCCAAAACCTATAGTCCTGAACCCAAATTCTTCTGATAGCAACGGCAACTCCCCCTCCCACAAGCATCATCATGAGATCATACTCAGCATATCTTCCATTATAGCTATTGGTGCAGCTTCATTTATCTTACTTGGTGTGGTAGCTGTCACTATCCTTAATATACGTGCAAGATCCTCACAGTCGCGTTCTGCTGCTCTTGCATTATCTGCTGGGGAGGATTTTAGCTGCTCCCCAAAAACTAATCCAGACTACGGAAAGCTCGTCATGTTTTCTGGAGATGCAGAGTTTGTAGTTGGTGCTCAAGCGTTGCTGAACAAGGACTGTGAACTTGGTCGAGGTGGATTTGGAGTTGTTTATAGAACGGTGCTTCGAGATGAGTGTTTAGTTGCAATCAAGAAGCTAACTGTCACAAGTTTGATCAAGTCACGAGAAGATTTTGAGAGTGAAGTGAAGAAGCTGGGACAGATCAGGCATCACAATCTTGTGGCACTTGAAGGGTATTACTGGACAACCTCCTTGCAGCTCCTCATTTATGAATACGTCCCCAATGGAAGTTTGTATAAACATCTACATGGTGGAACTGGCGACAATTGTTTGTCTTGGCGGCAGAGGTTCAAGATTGTTCTTGGAATGGCCAAAGGATTGGCTTATTTGCACCATAATAATATAATTCATTACAACTTGAAGTCAACCAATGTTTTGATAGACAGTTCTGGGAAACCAAAAGTGGGGGATTATGGGCTGGCAAGGTTGTTGCCAATGTTGGACCGTTGCATCTTAAGCAGTAAAATCCAAAGTGCTTTAGGATACATGGCTCCAGAGTTTGCCTGCAAAACAGTGACTATAACTGAAAAATGCGATGTGTATGGTTTTGGCATCTTGGTTTTGGAAGTGGTGACAGGAAAAAGACCTGTGGAGTACATGGAAGATGATGTTATAGTGCTCTGTGATATGGTGAGGGCAGCTTTGGATGAAGGCACGGTGGAGCGATGTGTTGATGAGAGACTCCAATCAAACTTCCGTGTTGAAGAGGCCATTCCTGTAATGAAACTGGGTTTGATATGTGCATCTCAAGTACCGTCCAACAGGCCAGACATGAATGAGGTTGTCAATATATTAGAGTTGATCCAATCCCCTCTGAAGCCGATGAGGAGTTGGAATGAAACTAACAAGCAAAACAGATACTTGCAATGCCTCGGTGAAGCTTAA 2925 42.84 MLFKLFFLLLILAPASVYALDTVFNDDVLGLIVFKAGLRDPMAKLLTWNEDDENPCNWFGVKCNPKTNRVSELVLDGFSLSGHIDRGLLRLQFLQILSLANNNFTGTINSALAHLTNLQVIDLSDNSLSGPIPEQLFLQCGSIRVISFARNNLTGNIPQSLTSCFSLEVLNFSSNHLSGKLPSGLWYLRGLQSLDFSDNLLEGQIPPGIQNLYDLRFVNLQKNRFSGRLPEDIGGCLLLKSIDFSENILSGGLPESMQMLSSCTYLNLRGNSLTGEVPRWIGELKNLETLDLSTNNFSGQVPSSIGNLQLLKKFNVSMNYFTGNLPESMAYCNSLLSIDASHNHLTGSLPSWIFRAVMPSVPLSSYRLEENLSFPTSFDGLQVLDLSSNVFSGHIPSNVGELSNLQLLNISRNHLVGSIPGSIGELKSVYALDFSDNQLNGSIPAEIGGAISLKDLRLEKNFLTGEIPNKIDKCSLLTSLILSHNNLTGSIPAAVANLSNLENVDLSFNKLSGSLPKELTNLSHLLSFNISHNHLEGELPVGGFFNTISPLSISHNPSLCGAVVNRSCPSVHPKPIVLNPNSSDSNGNSPSHKHHHEIILSISSIIAIGAASFILLGVVAVTILNIRARSSQSRSAALALSAGEDFSCSPKTNPDYGKLVMFSGDAEFVVGAQALLNKDCELGRGGFGVVYRTVLRDECLVAIKKLTVTSLIKSREDFESEVKKLGQIRHHNLVALEGYYWTTSLQLLIYEYVPNGSLYKHLHGGTGDNCLSWRQRFKIVLGMAKGLAYLHHNNIIHYNLKSTNVLIDSSGKPKVGDYGLARLLPMLDRCILSSKIQSALGYMAPEFACKTVTITEKCDVYGFGILVLEVVTGKRPVEYMEDDVIVLCDMVRAALDEGTVERCVDERLQSNFRVEEAIPVMKLGLICASQVPSNRPDMNEVVNILELIQSPLKPMRSWNETNKQNRYLQCLGEA 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46886267 46889594 - Lag0027352.1 Lac10g3307 585838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3307 974 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Lac10g3307 974 Pfam Protein tyrosine and serine/threonine kinase 678 944 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g3307 974 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 670 752 - -
Lac10g3307 974 Pfam Leucine Rich Repeat 166 188 IPR001611 GO:0005515(InterPro)
Lac10g3307 974 Pfam Leucine Rich Repeat 94 115 IPR001611 GO:0005515(InterPro)
Lac10g3307 974 Pfam Leucine Rich Repeat 500 522 IPR001611 GO:0005515(InterPro)
Lac10g3307 974 Pfam Leucine Rich Repeat 191 212 IPR001611 GO:0005515(InterPro)
Lac10g3307 974 Pfam Leucine Rich Repeat 381 402 IPR001611 GO:0005515(InterPro)
Lac10g3307 974 Pfam Leucine Rich Repeat 264 284 IPR001611 GO:0005515(InterPro)
Lac10g3307 974 Pfam Leucine Rich Repeat 215 236 IPR001611 GO:0005515(InterPro)
Lac10g3307 974 Pfam Leucine Rich Repeat 404 426 IPR001611 GO:0005515(InterPro)
Lac10g3307 974 Pfam Leucine Rich Repeat 477 498 IPR001611 GO:0005515(InterPro)
Lac10g3307 974 Pfam Leucine Rich Repeat 286 308 IPR001611 GO:0005515(InterPro)
Lac10g3307 974 Pfam Leucine Rich Repeat 117 136 IPR001611 GO:0005515(InterPro)
Lac10g3307 974 Pfam Leucine Rich Repeat 334 354 IPR001611 GO:0005515(InterPro)
Lac10g3307 974 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 275 949 IPR051564 GO:0016020(PANTHER)
Lac10g3307 974 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 304 572 - -
Lac10g3307 974 Gene3D Ribonuclease Inhibitor 181 280 IPR032675 -
Lac10g3307 974 Gene3D Ribonuclease Inhibitor 25 180 IPR032675 -
Lac10g3307 974 CDD STKc_IRAK 682 948 - -
Lac10g3307 974 ProSiteProfiles Protein kinase domain profile. 676 948 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3307 974 Gene3D Phosphorylase Kinase; domain 1 665 752 - -
Lac10g3307 974 SUPERFAMILY RNI-like 253 560 - -
Lac10g3307 974 SMART LRR_typ_2 115 139 IPR003591 -
Lac10g3307 974 SMART LRR_typ_2 284 308 IPR003591 -
Lac10g3307 974 SMART LRR_typ_2 212 236 IPR003591 -
Lac10g3307 974 SMART LRR_typ_2 402 426 IPR003591 -
Lac10g3307 974 SMART LRR_typ_2 522 546 IPR003591 -
Lac10g3307 974 SMART LRR_typ_2 188 211 IPR003591 -
Lac10g3307 974 SMART LRR_typ_2 91 114 IPR003591 -
Lac10g3307 974 SMART LRR_typ_2 498 521 IPR003591 -
Lac10g3307 974 SUPERFAMILY Protein kinase-like (PK-like) 679 955 IPR011009 -
Lac10g3307 974 ProSitePatterns Protein kinases ATP-binding region signature. 682 705 IPR017441 GO:0005524(InterPro)
Lac10g3307 974 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 25 303 - -
Lac10g3307 974 Gene3D Transferase(Phosphotransferase) domain 1 753 969 - -
Lac10g3307 974 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 753 954 - -
Lac10g3307 974 SMART LRR_sd22_2 498 524 - -
Lac10g3307 974 SMART LRR_sd22_2 284 310 - -
Lac10g3307 974 SMART LRR_sd22_2 115 130 - -
Lac10g3307 974 SMART LRR_sd22_2 188 214 - -
Lac10g3307 974 Gene3D Ribonuclease Inhibitor 285 360 IPR032675 -
Lac10g3307 974 Gene3D Ribonuclease Inhibitor 363 571 IPR032675 -
Lac10g3307 974 SUPERFAMILY L domain-like 42 353 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3307 Lac-Chr10:46886267 Lac8g2839 Lac-Chr8:45589580 4.20E-181 dispersed
Lac10g1668 Lac-Chr10:18292872 Lac10g3307 Lac-Chr10:46886267 3.20E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85717 PF07714 PK_Tyr_Ser-Thr 4.90E-42 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3307 - - - 0.0