Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3312 ATGGTTTCGTCCCAATTTTGTGGCTTGACCAAGATTAGCAAGAGCAACACAATTCGAAGTCAGCATCTTTTACCTACAAACACTATCGATTGTGCATCTCTGGATTCTGTTAATCTGGATTTCTCTGATGTATTTGGCTCCATATCATTTCATGCCCCAACTGAAGTGGATACTGTTGATTTAGATTTTCATGTATGCCATGAAGATTCACGTGAACTCATATATGATGATCCTGAAGTTATTTACAACCGATCTCATTCTTTGGTTGGTCCCTCTTCTTGTGCAAGTCAAACCCTTAAGCTAAGCAAACTAACTATTTCCGAGACCAAGGATTCAAGGGAATTAGTTGCATGTATCAGCAAGGAGACTAACAGCAAACTTCAAGAACATTCAAGTGGTTCTTTTATTGATAGAACTCTTGAAGATCTTGATAGAGGTTACATGAAAGTTGAGAGTGTAGGGATTGATGACTTCGAAGTTCTCAAGGTTGTTGGGCAGGGTGCATTTGCTAAGGTTTATCAGGTGAGGCGAAAGGGTACGTTGGAGATATATGCAATGAAGGTTATGCGAAAGGACAAGATAATGGAGAAGAACCATGTTGAATACATGAAAGCCGAGAGGGATATTTTAACAAAAACTGACCATCCATTCATTGTCCAGCTAAGATACTCATTCCAGACAAAATACAGGCTATATCTTGTTCTGGATTTTGTAAATGGTGGCCATCTTTTCTTTCAGCTTTATCACCACGGGCTTTTCAGGGAAGATCTTGCTCGTATTTATGCTGCCGAGATTGTTTCGGCTGTTTCTCATCTCCATTCAAATGGCATAATGCACAGGGACCTAAAACCTGAAAATATTTTACTGGATGACCTTGGCCATATTATGTTGACTGATTTTGGTCTGGCGAAACGGTTTGAAGAGAATACAAGATCGAATTCTATGTGTGGAACACAAGAATATATGTCACCGGAAATAGTTCTTGGAAAAGGCCACGACAAGGCTGCAGATTGGTGGAGTGTAGGAATACTATTATTTGAAATGCTTACTGGGAAGCCTCCTTTTATTGGGAATCGAGAAAAAGTACAACAAAAGATAGTGAAGGACAAGATCAAGCTGCCAGCATATTTGTCTAGTGAAGCACATTCTCTTTTGAAAGGGCTGCTTCAAAAGGAGGCGGGTAAGCGATTGGGCAGTGGTCCTACGGGAAGCGAGGAAATCAAACGCCACAAGTGGTTCAAGCCAATCAATTGGAAGAAATTGGAGAAGCGGGAAATCCAACCAAGCTTTCGGCCTGAAGTAGCTGGGAAACACTGCGTTGCCAACTTTGAGAAGCGCTGGACTGAAATGCCACTTGTTGATTCTCCGGTTGCCAGCCCTAAAGCCGAAGGAAACCCCTTCATCGGGTTTAGCTATGTAAAACCCGCAGCCTCATTTATCAACCTCAACAAAGATACACCCATCTATTGA 1470 41.63 MVSSQFCGLTKISKSNTIRSQHLLPTNTIDCASLDSVNLDFSDVFGSISFHAPTEVDTVDLDFHVCHEDSRELIYDDPEVIYNRSHSLVGPSSCASQTLKLSKLTISETKDSRELVACISKETNSKLQEHSSGSFIDRTLEDLDRGYMKVESVGIDDFEVLKVVGQGAFAKVYQVRRKGTLEIYAMKVMRKDKIMEKNHVEYMKAERDILTKTDHPFIVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHHGLFREDLARIYAAEIVSAVSHLHSNGIMHRDLKPENILLDDLGHIMLTDFGLAKRFEENTRSNSMCGTQEYMSPEIVLGKGHDKAADWWSVGILLFEMLTGKPPFIGNREKVQQKIVKDKIKLPAYLSSEAHSLLKGLLQKEAGKRLGSGPTGSEEIKRHKWFKPINWKKLEKREIQPSFRPEVAGKHCVANFEKRWTEMPLVDSPVASPKAEGNPFIGFSYVKPAASFINLNKDTPIY 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46909401 46911547 - Lag0027357.1 Lac10g3312 585843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3312 489 PANTHER RIBOSOMAL PROTEIN S6 KINASE 125 477 - -
Lac10g3312 489 FunFam Non-specific serine/threonine protein kinase 155 261 - -
Lac10g3312 489 Gene3D Transferase(Phosphotransferase) domain 1 238 432 - -
Lac10g3312 489 ProSiteProfiles AGC-kinase C-terminal domain profile. 414 482 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3312 489 ProSiteProfiles Intein N-terminal splicing motif profile. 118 219 IPR006141 GO:0016539(InterPro)
Lac10g3312 489 Pfam Protein kinase C terminal domain 435 472 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3312 489 SMART serkin_6 158 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3312 489 CDD STKc_AGC 164 413 IPR045270 GO:0004674(InterPro)|GO:0005524(InterPro)
Lac10g3312 489 ProSiteProfiles Protein kinase domain profile. 158 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3312 489 Gene3D Phosphorylase Kinase; domain 1 155 454 - -
Lac10g3312 489 FunFam Non-specific serine/threonine protein kinase 238 432 - -
Lac10g3312 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g3312 489 SMART pkinase_C_6 414 474 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3312 489 SUPERFAMILY Protein kinase-like (PK-like) 155 471 IPR011009 -
Lac10g3312 489 Pfam Protein kinase domain 158 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3312 489 ProSitePatterns Protein kinases ATP-binding region signature. 164 187 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3312 Lac-Chr10:46909401 Lac3g0658 Lac-Chr3:5116600 1.00E-135 dispersed
Lac10g3312 Lac-Chr10:46909401 Lac12g0426 Lac-Chr12:4741509 1.10E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85718 PF00069 Pkinase 2.80E-73 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3312 K04688 - mdm:103423523 712.99