Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3324 ATGGACGTAGCACACCAGCCAAGCCTACCGCCGTCAGCACTGCTGCATCACAGTCCCAATCACAACTTCAGCCACAGCAAACTAAGTGGAGTCGAGATGGGCAACTGCGGTACTAGAGAAGAGTCTGCAGTTGTTTCCAATGCTCAAGTTCAACAGCTGCATACTTTATCGTCTTCCTTGGCTGTGAAAAACGCCAGCAACAATGCTACAGATAAAAGGCATATTCATAACCGGTCCGTATCAGATCTAAGCGATCCTTCGACCCCTCGTAACCTCGAGGACTTTAGAAAGAATTCGGTGCTTTACACCCATGTTATCGCCTTCACATTATACGAGCTGGAAACTATCACCAAGAGTTTCCGTTCCGATTACATTCTCGGGGAGGGCGGCTTTGGAACTGTTTATAAAGGTTACATTGACGAGAACGTCAGGGTTGGCCTCAAATCACTTCCTGTCGCTGTCAAGGTTCTCAATAAGGAAGGCCTCCAGGGCCACCGAGAATGGCTTACAGAGGTCAATTTTCTTGGTCAGCTAAGACATCCAAACCTTGTAAAGTTGATTGGTTACTGCTGCGAGGATGACCACAGATTACTGGTGTACGAGTTCATGTTTAGAGGAAGCCTTGAAAACCACCTCTTTCGAAAGACAACTGTTCCATTGCCATGGGCAAGAAGGATGATGATAGCTCTTGGAGCGGCCAAGGGACTTGCTTTCCTTCACAATGCTGAAAGGCCCGTTATCTATCGAGATTTTAAAACCTCTAATATACTGTTGGACTCTGACTATACAGCCAAGCTTTCTGATTTTGGGCTTGCAAAAGCTGGACCACAAGGTGATGAGACTCATGTTTCAACTCGAGTAATGGGAACTTATGGTTATGCTGCCCCCGAATATGTCATGACTGGGCACTTGACAGCAAGGAGTGATGTATATAGCTTCGGTGTTGTTCTTCTGGAGCTTTTGACGGGAAGAAAGTCCGTTGACAAGACAAAACCAAGCAAGGAGCAGAATTTGGTAGATTGGGCCCGACCTAAACTAAATGACAAAAGGAAGTTGCTACAAATAATTGATCCCAGATTAGAAAATCAATACTCTATAAGGGCAGCACAGAAGGCCTGCAGCCTGGCGTACTATTGCCTGAGCCAGAATCCCAAAGCAAGACCATTAATGAGCGATGTGGTTGAAACTTTGGAACCATTACAGAGCGGTAACGGTGCAACTGAGTACTCATCAACGGGAACTAGTCCATTTGTTAGGGGGGGCATCCCTGATTACAGGATGCGGCAAAGGTTTACCGACAATGTTGGTTCGGGTGCTAGTTGCCGGTCTCCCAACCCCAACTGTTCCCCGAGCGGGCCTGCAACATGGTCATTCGACACTGTTGATCACCAACCTGGAATTGTAATATTTAGCCATGTGTTGTGTAGAACATTTGGAAGTGTAATTATTATATGGACACATCGCTCTAACTTGCATGTGAAGGTGCCGCCTCCCGGATGA 1500 46.67 MDVAHQPSLPPSALLHHSPNHNFSHSKLSGVEMGNCGTREESAVVSNAQVQQLHTLSSSLAVKNASNNATDKRHIHNRSVSDLSDPSTPRNLEDFRKNSVLYTHVIAFTLYELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKTTVPLPWARRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTKPSKEQNLVDWARPKLNDKRKLLQIIDPRLENQYSIRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSGNGATEYSSTGTSPFVRGGIPDYRMRQRFTDNVGSGASCRSPNPNCSPSGPATWSFDTVDHQPGIVIFSHVLCRTFGSVIIIWTHRSNLHVKVPPPG 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46952075 46970382 + Lag0027369.1 Lac10g3324 585855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3324 499 MobiDBLite consensus disorder prediction 1 34 - -
Lac10g3324 499 FunFam Serine/threonine-protein kinase BIK1 87 202 - -
Lac10g3324 499 ProSitePatterns Protein kinases ATP-binding region signature. 126 155 IPR017441 GO:0005524(InterPro)
Lac10g3324 499 Pfam Protein kinase domain 124 395 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3324 499 CDD STKc_IRAK 126 400 - -
Lac10g3324 499 MobiDBLite consensus disorder prediction 67 88 - -
Lac10g3324 499 MobiDBLite consensus disorder prediction 13 31 - -
Lac10g3324 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g3324 499 ProSiteProfiles Protein kinase domain profile. 120 401 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3324 499 PANTHER OS01G0588500 PROTEIN-RELATED 95 401 IPR050823 -
Lac10g3324 499 FunFam Probable serine/threonine-protein kinase PBL8 203 415 - -
Lac10g3324 499 SUPERFAMILY Protein kinase-like (PK-like) 95 398 IPR011009 -
Lac10g3324 499 Gene3D Transferase(Phosphotransferase) domain 1 203 413 - -
Lac10g3324 499 Gene3D Phosphorylase Kinase; domain 1 85 202 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3324 Lac-Chr10:46952075 Lac6g3106 Lac-Chr6:48487171 2.20E-125 dispersed
Lac6g2184 Lac-Chr6:38324683 Lac10g3324 Lac-Chr10:46952075 1.00E-42 dispersed
Lac3g1175 Lac-Chr3:9973694 Lac10g3324 Lac-Chr10:46952075 1.40E-127 transposed
Lac6g2185 Lac-Chr6:38344438 Lac10g3324 Lac-Chr10:46952075 2.90E-73 transposed
Lac10g1651 Lac-Chr10:17994585 Lac10g3324 Lac-Chr10:46952075 7.40E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85719 PF00069 Pkinase 8.80E-48 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3324 - - - 0.0