Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3325 ATGTCAGCTGTGCAAACGCTCCTACTTTTGGTTTTTTTCTACGCTGGAACCGACTTAGCCGATTCTTTAACTGATCCCCACGATTCTGTGGCGCTGGAGTCCCTGAAAAACGAATGGCAAAATACGCCACCAAGCTGGGGAACATCAAACGATCCATGTGGTACTCCCTGGGAAGGAGTGACTTGCGTCGATTCAAGAGTAACTGCACTGAGATTATCAACCATGGGCCTAAAAGGTAAACTTGGTGGTGACATTGGAGGTCTGACTGAACTAACATCATTGGACCTTTCGTTCAACAAAGATCTCACTGGTTCAATCTCTCCAGCATTAGGGGATCTACGGAATTTGAAAATCTTGATCCTAGCTGGGTGTGGCTTCAGTGGCAATATTCCTGAAGAACTGGGCAATCTTTCTGAGCTATCCTTCTTGGCTTTAAATTCTAACAATTTCACTGGTACCATACCGCCATCTCTGGGAAAACTCTCCAAACTCTATTGGCTGGACCTGGCAGATAATCAATTGACAGGTAGTCTCCCAGTCTCGACTTCCGAATCTCCTGGTTTGGACCTCCTTCTGAAGGCTAAACATTTTCATTTCAACAAAAACAAGCTATCAGGTTCCATTTCACCAAAACTTTTTAGCTCTGAAATGGTATTAATACACATATTATTTGATGGAAATGATTTTTCTGGGAGTATCCCCCCAACATTGGGACTTGTTAAGACCCTTGAGGTTCTTCGACTTGATCGGAATTATCTAAACGGAACTGTCCCGTCAAATCTGAACAACCTCACAAATATCAATGAATTGAATTTAGCCAACAATAAGTTGACCGGTCCAATGCCAAACTTAACTCAAATGAGTTCACTAAATTATGTGGACCTTAGTAACAACTCATTTGATTCATCAGCAGCTCCAGAATGGTTCTCAAATCTACAATTTCTCACCACTCTGATTGTTGAACATGGATCATTACGAGGACCTGTGCCACAAGGAGTTTTTAGCTTACCACAAATCCAACAAATAAAACTGAAGAACAATGAATTCAGTGGGACATTAGATATGGGTGACAAAATCAGCCAACAGCTGCAGTTCGCTGATTTGCAAAATAACAATATTTCCCAATTTACCCTTGGTTCAGGATATACCAAAACTTTGATGTTGATAGGGAATCCTGTGTGTAGCACTGATGTTACCCTCTCAAATACGAACTATTGCCAGCTTCAAAATCACCCGGTGCAACCCTATTCTACCAGCCTTGCCCGCTGTGGAAGTAAGTCATGTGCGCCTGAAGAGAAGTTAAACCCTCAGAGTTGTGAATGTGCCTTTCCATTTGAAGGGACTTTATACTTTAGAGCGCCCTCGTTCAGGGAATTGTCCAATGTGACTTTGTTCAATTCACTGGAAAAGAGCCTTTGGGAAAAACTGGACCTTACGCCTGGTTCAGTTTCTATTCAAAACCCTTTCTTTAATGTTGACGATTATCTTCAGATGCAGCTTGCTCTTTTTCCACCCAACGGACAGTATTTTAATAGGTCAGAAGTTCAGAGGATTGGGTTTGACTTGAGTAATCAAACTTACAAACCTCCCAAAGAATTTGGGCCATTTTATTTCATTGCATCTCCCTATGGTTTTTCAGTCACGCCTGGAGGAACTTCAATTAGCCCTGGAGTGATAATTGGGGTAGCTATTGGTTGTGCCTTTCTCGTTCTAGGCCTCGTTGGAGTTGGAATATATGCGATTCGGCAAAAGAAACGTGCAGAAAAGGCCATCGGATTGAGTCGGCCATTTGCTTCTTGGGCACCAAGTGGAAACGATAGTGGAGGTGCACCACAATTGAAGGGAGCCAGATGGTTTTCTTATGATGAACTTAAAAAATGCACAAATAATTTCTCCATGAGCAATGAGATAGGATCTGGAGGATATGGCAAGGTATATAGAGGAATGCTTGTCGATGGACAAGTAGTTGCAATCAAGAGAGCTCAACAAGGATCCATGCAAGGTGGCCTTGAGTTCAAGACAGAAATCGAACTGCTGTCACGAGTTCATCACAAGAACCTTCTTGGCCTCGTAGGATTTTGTTTTGAACAAGGAGAACAGATGCTTGTTTATGAATATATGCCTAATGGAACACTGAGAGATAGTCTATCTGGGAAATCTGGTATTAGTCTTGATTGGAAGAGAAGACTTCGTATTGCACTTGGGTCTGCCAGAGGATTGACTTACTTACATGAACTTGCTAATCCTCCTATAATCCATAGAGACATTAAGTCCACCAACATTCTCTTGGATGAACATTTAAATGCAAAAGTTGCAGATTTTGGCTTGTCCAAGCTTGTCTCAGATAGTGAAAAGGGACACGTATCTACTCAAGTGAAAGGAACACTGGGTTATTTGGATCCTGAATATTATATGACTCAACAGTTGACTGAGAAAAGTGATGTATATAGCTTTGGAGTGGTTATGTTGGAATTGGTAACTGCTAAGCTGCCTATTGAGAAAGGAAAGTATGTAGTTCGTGAGGTGCGTATGTTGATGAATAAAAGTGAAGAAGAATATCATGGTTTGAAGCAGATAATGGATGCAACCATAATAAACAATACAACAACTATTACTGGACTTGGAAGGTTCTTAGAGTTGGCCATGCAATGCGTTGAAGAATCAGCAGCAGAGCGTCCCACAATGAGTGAAGTGGTCAAAGCAATTGAAAGTATCTTGCAGAATGATGGAATAAATACGAACACAACATCTGCATCCTCGTCTGCAACCGACTTTGGGACTTCCAAAACCGCTCCTAGACATCCCTATAATGATCCTATACCAAAAAAGGACCCTAATGACAGTAATGCTTTTGATTACAGCGGTGGATACACTCTTTCAGCAAAAGTGGAACCCAAATAG 2901 41.61 MSAVQTLLLLVFFYAGTDLADSLTDPHDSVALESLKNEWQNTPPSWGTSNDPCGTPWEGVTCVDSRVTALRLSTMGLKGKLGGDIGGLTELTSLDLSFNKDLTGSISPALGDLRNLKILILAGCGFSGNIPEELGNLSELSFLALNSNNFTGTIPPSLGKLSKLYWLDLADNQLTGSLPVSTSESPGLDLLLKAKHFHFNKNKLSGSISPKLFSSEMVLIHILFDGNDFSGSIPPTLGLVKTLEVLRLDRNYLNGTVPSNLNNLTNINELNLANNKLTGPMPNLTQMSSLNYVDLSNNSFDSSAAPEWFSNLQFLTTLIVEHGSLRGPVPQGVFSLPQIQQIKLKNNEFSGTLDMGDKISQQLQFADLQNNNISQFTLGSGYTKTLMLIGNPVCSTDVTLSNTNYCQLQNHPVQPYSTSLARCGSKSCAPEEKLNPQSCECAFPFEGTLYFRAPSFRELSNVTLFNSLEKSLWEKLDLTPGSVSIQNPFFNVDDYLQMQLALFPPNGQYFNRSEVQRIGFDLSNQTYKPPKEFGPFYFIASPYGFSVTPGGTSISPGVIIGVAIGCAFLVLGLVGVGIYAIRQKKRAEKAIGLSRPFASWAPSGNDSGGAPQLKGARWFSYDELKKCTNNFSMSNEIGSGGYGKVYRGMLVDGQVVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLLGLVGFCFEQGEQMLVYEYMPNGTLRDSLSGKSGISLDWKRRLRIALGSARGLTYLHELANPPIIHRDIKSTNILLDEHLNAKVADFGLSKLVSDSEKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELVTAKLPIEKGKYVVREVRMLMNKSEEEYHGLKQIMDATIINNTTTITGLGRFLELAMQCVEESAAERPTMSEVVKAIESILQNDGINTNTTSASSSATDFGTSKTAPRHPYNDPIPKKDPNDSNAFDYSGGYTLSAKVEPK 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46977279 46984653 + Lag0027370.1 Lac10g3325 585856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3325 966 Gene3D Ribonuclease Inhibitor 284 421 IPR032675 -
Lac10g3325 966 SUPERFAMILY L domain-like 284 396 - -
Lac10g3325 966 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Lac10g3325 966 FunFam Leucine-rich repeat family protein 27 183 - -
Lac10g3325 966 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 707 919 - -
Lac10g3325 966 CDD STKc_IRAK 637 905 - -
Lac10g3325 966 PANTHER RECEPTOR-LIKE PROTEIN 55 44 903 - -
Lac10g3325 966 Gene3D Phosphorylase Kinase; domain 1 605 706 - -
Lac10g3325 966 Gene3D Ribonuclease Inhibitor 219 283 IPR032675 -
Lac10g3325 966 Pfam Protein tyrosine and serine/threonine kinase 632 901 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g3325 966 ProSiteProfiles Protein kinase domain profile. 631 906 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3325 966 Gene3D Transferase(Phosphotransferase) domain 1 707 930 - -
Lac10g3325 966 MobiDBLite consensus disorder prediction 911 953 - -
Lac10g3325 966 Gene3D Ribonuclease Inhibitor 23 218 IPR032675 -
Lac10g3325 966 SUPERFAMILY L domain-like 41 300 - -
Lac10g3325 966 ProSitePatterns Protein kinases ATP-binding region signature. 637 659 IPR017441 GO:0005524(InterPro)
Lac10g3325 966 SUPERFAMILY Protein kinase-like (PK-like) 616 917 IPR011009 -
Lac10g3325 966 Pfam Leucine Rich Repeat 115 137 IPR001611 GO:0005515(InterPro)
Lac10g3325 966 Pfam Leucine Rich Repeat 289 312 IPR001611 GO:0005515(InterPro)
Lac10g3325 966 Pfam Leucine Rich Repeat 243 264 IPR001611 GO:0005515(InterPro)
Lac10g3325 966 Pfam Leucine Rich Repeat 140 161 IPR001611 GO:0005515(InterPro)
Lac10g3325 966 FunFam Leucine-rich repeat protein kinase family protein 600 706 - -
Lac10g3325 966 FunFam Predicted protein 186 408 - -
Lac10g3325 966 SMART serkin_6 631 906 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g3325 966 ProSitePatterns Serine/Threonine protein kinases active-site signature. 751 763 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g3325 966 MobiDBLite consensus disorder prediction 911 930 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3325 Lac-Chr10:46977279 Lac2g1615 Lac-Chr2:14347267 0.00E+00 dispersed
Lac13g2062 Lac-Chr13:29466345 Lac10g3325 Lac-Chr10:46977279 1.40E-06 dispersed
Lac10g3325 Lac-Chr10:46977279 Lac7g1602 Lac-Chr7:18816416 0.00E+00 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85720 PF07714 PK_Tyr_Ser-Thr 2.60E-48 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3325 - - - 0.0