Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0043 ATGCCTTCATGGTGGGGGAAGCCATCATCAAAAGAAGTAAAGAAGAGCAAGGAAAGTTTTATCGACACATTGCAGAGAAAACTTAGAACCACTGATGGTAAAACAAACAGCAGATCAGGAGGGTCTCCGAGAAATTGCAACGACACAATTTCTGAGCAGGGATCTCGATCTCCTATTCTTTCAAGATCAGTTTCACCTTCCAAACAAGTTTCAAGATGTCAAAGCTTTTCTGAAAGGCCACAAGCACAACCTCTTCCACTTCCTGGTGTGCAGCCACCGATTGTAGGTCGTACAGACTCTGGGATTAGTATTTCACCAAAACCAAGATCTGAAAGGGGCTCCAAGCCATTATCATTTCTACCACTGCCGAGACCAGCATGTATCCCTAGGAGGCCAAACCATGCAGATTTAGATGCAGATCTTGGTGTTGGCTCAGTGTCTAGTGAGAGCTCAATTGATAGCACTGATCTGCCGGATTCACGCCATCGTAGTCCTCAGGCAACTGACTATGATCTTGGGACTAAAACTGCTGCAGGCAGTCCTTCCAGTGTCATTGTCAAGGATCAGTTTTCTATTGTCACCCCACCAAGTTCGCGAGAGGCAAGAAAACCAGCAAATATCTCATTGAGCAACCACATTTTCTCTACATCCCCCAAAAGGAGGCCTTTAAGCAGTCATGTTCCAAATCTTCAAGTTCCATATCATGGGAATTTATGCATTGCTCCAGACAGTTCAATGTCAAGCCCTTCTAGAAGTCCCATGAGGGCATTCAGCACAGAGCAAGTTATTAATAATGCTGTCAGTGCTGGAAAGCTCTATATGGATGTCACTTTTCCTGGATCAGGCCATTGTTCTAGTCCTGGTTCTGGTTACAATTCTGGGCATAATTCTATGGGTGGTGATTTGTCAGGGCAGTTATTTTTGCAACAAAGCCGGGGTAGCCCGGAATATTCCCCAGCACCCAGTCCCAGAATGACCAGTCCTGGCCCTAGCTCCAGAGTCCATAGTGGTGCAGTAACCCCAATTCATCCAAGGGCGGGAGGGATACCAACTGAGTCACAGACAAGCTGGCCTGATGAAAAGCAGACTCACCGCTTGCCTCTTCCTCCGGTTGCAATTTCCAATGCTCCTTTTTCTCATTCCAATTCAGCTGCAACATCTCCATCTGTCCCAAGAAGTCCTGGAAGGGCCGATAATCCAGCAAGCCCAGGCTCCCGTTGGAAAAAGGGGAAGCTTTTGGGTAGAGGCACTTTTGGGCATGTGTATGTTGGTTTTAACAGTGAAAGTGGTGAAATGTGTGCAATGAAGGAGGTCACATTATTTTCAGATGATGCAAAGTCCAAGGAGAGTGCCAAGCAATTAATGCAAGAAATTACCTTGTTGAGTCGTTTACGGCATCCAAATATTGTGCAGTATTATGGATCTGAAACGGTTGGCGACAGGCTTTACATTTACCTTGAATATGTATCTGGTGGCTCTATTTACAAGCTTCTCCAGGAATATGGACAGCTTGGCGATTCAGCACTTCGTAGTTATACTCAGCAAATATTGTCCGGGCTTGCATATTTACATGCTAAAAGTACTGTTCACAGGGATATCAAAGGAGCAAATATACTTGTTGATCCCACCGGGCGCGTTAAGTTGGCCGACTTTGGGATGGCAAAACATATCACTGGGCAATCATGCCCTTTGTCTTTTAAAGGCAGCCCGTACTGGATGGCACCTGAGGTCATAAAAAACTCAAATGGTTGTAACCTTGCGGTGGATATTTGGAGCCTTGGATGCACTGTTTTGGAGATGGCAACTACAAAACCTCCTTGGAGTCAATATGAGGGAGTCGCTGCAATGTTTAAGATTGGAAACAGCAAAGAACTTCCTGAAATACCGGATCATCTTTCACATGATGGAAAAGACTTTGTTAGACAATGTCTGCAACGGAATCCAGCTCATCGTCCTACAGCTGCTCAGCTTTTGGAGCATCCTTTTGTCAAATATGCTGCACCTCTTGAAAGACCCATTTTGGGTTCTGAACATACAGATCCAACTCCAGGAATTACAAATGGAGTAAGAACTCTGGGTATTGAGTCAGGAAGGAATCCCAGCTTCTTGGATTCTGATAGATCTGCAGCTCATTCATCTAGACTCTCGACAGCTGCTTTTCTTTCCAGTGAAATCCATATTCCAAGGAACCTATCATGTCCTGTTTCGCCCATTGGAAGTCCTCTGGTGCACTCTAGGTCGCCACAACATCCCAGTGGAAGAATGTCTCCGTCACCCATCTCTAGCCCTCGGAACATGTCAGGTGCATCCACTCCTCTCACAGGAGGAAGCGGTGCCATTCCACACCAGCACCTCAAACAATCACTGTACCTACAGGAGGGTTTTGGAAGCTTGCCAAAGCCTTCAATAGGCCCCTATAGTAACGGCCCTTCCTATCACGATTCAAACCCCGATATCTTTCAGGGGATTCAACCTGGCTCTCACATCTTCTCTGAGCAGTTTGGAAAGCCTGCCTGGGAATTGTATGACGGGCAGGCAGTCTTGGCTGATCGTGTTTCTAGGCAGTTGCTGAGTGATCACATAACAACTCCTTCCCTGGATTTAAGTCCGAGCTCTCTTTTGACCAACCGCAAGTAG 2637 46.23 MPSWWGKPSSKEVKKSKESFIDTLQRKLRTTDGKTNSRSGGSPRNCNDTISEQGSRSPILSRSVSPSKQVSRCQSFSERPQAQPLPLPGVQPPIVGRTDSGISISPKPRSERGSKPLSFLPLPRPACIPRRPNHADLDADLGVGSVSSESSIDSTDLPDSRHRSPQATDYDLGTKTAAGSPSSVIVKDQFSIVTPPSSREARKPANISLSNHIFSTSPKRRPLSSHVPNLQVPYHGNLCIAPDSSMSSPSRSPMRAFSTEQVINNAVSAGKLYMDVTFPGSGHCSSPGSGYNSGHNSMGGDLSGQLFLQQSRGSPEYSPAPSPRMTSPGPSSRVHSGAVTPIHPRAGGIPTESQTSWPDEKQTHRLPLPPVAISNAPFSHSNSAATSPSVPRSPGRADNPASPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLMQEITLLSRLRHPNIVQYYGSETVGDRLYIYLEYVSGGSIYKLLQEYGQLGDSALRSYTQQILSGLAYLHAKSTVHRDIKGANILVDPTGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPEIPDHLSHDGKDFVRQCLQRNPAHRPTAAQLLEHPFVKYAAPLERPILGSEHTDPTPGITNGVRTLGIESGRNPSFLDSDRSAAHSSRLSTAAFLSSEIHIPRNLSCPVSPIGSPLVHSRSPQHPSGRMSPSPISSPRNMSGASTPLTGGSGAIPHQHLKQSLYLQEGFGSLPKPSIGPYSNGPSYHDSNPDIFQGIQPGSHIFSEQFGKPAWELYDGQAVLADRVSRQLLSDHITTPSLDLSPSSLLTNRK 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 370305 374992 + Lag0030681.1 Lac11g0043 585901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0043 878 MobiDBLite consensus disorder prediction 740 781 - -
Lac11g0043 878 MobiDBLite consensus disorder prediction 34 81 - -
Lac11g0043 878 FunFam Mitogen-activated protein kinase kinase kinase 405 687 - -
Lac11g0043 878 SUPERFAMILY Protein kinase-like (PK-like) 405 754 IPR011009 -
Lac11g0043 878 MobiDBLite consensus disorder prediction 24 179 - -
Lac11g0043 878 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 58 667 IPR050538 -
Lac11g0043 878 MobiDBLite consensus disorder prediction 283 317 - -
Lac11g0043 878 MobiDBLite consensus disorder prediction 283 410 - -
Lac11g0043 878 MobiDBLite consensus disorder prediction 801 820 - -
Lac11g0043 878 MobiDBLite consensus disorder prediction 742 777 - -
Lac11g0043 878 SMART serkin_6 407 663 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g0043 878 Pfam Protein kinase domain 408 663 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g0043 878 Gene3D Transferase(Phosphotransferase) domain 1 405 679 - -
Lac11g0043 878 ProSiteProfiles Protein kinase domain profile. 407 663 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g0043 878 CDD STKc_MEKK1_plant 406 663 - -
Lac11g0043 878 ProSitePatterns Protein kinases ATP-binding region signature. 413 436 IPR017441 GO:0005524(InterPro)
Lac11g0043 878 MobiDBLite consensus disorder prediction 375 393 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0043 Lac-Chr11:370305 Lac6g2641 Lac-Chr6:44160082 5.50E-71 dispersed
Lac11g0454 Lac-Chr11:4736736 Lac11g0043 Lac-Chr11:370305 1.80E-50 transposed
Lac12g2311 Lac-Chr12:40265493 Lac11g0043 Lac-Chr11:370305 1.10E-74 transposed
Lac1g2377 Lac-Chr1:45087148 Lac11g0043 Lac-Chr11:370305 3.10E-119 transposed
Lac1g2543 Lac-Chr1:46808189 Lac11g0043 Lac-Chr11:370305 1.30E-95 transposed
Lac2g1245 Lac-Chr2:10155119 Lac11g0043 Lac-Chr11:370305 1.00E-51 transposed
Lac6g0356 Lac-Chr6:2949106 Lac11g0043 Lac-Chr11:370305 5.70E-95 transposed
Lac8g1900 Lac-Chr8:37256127 Lac11g0043 Lac-Chr11:370305 1.90E-69 transposed
Lac11g0043 Lac-Chr11:370305 Lac5g2947 Lac-Chr5:47502179 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85721 PF00069 Pkinase 1.00E-71 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0043 K20717 - csv:101222716 1654.42