Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g0043 | ATGCCTTCATGGTGGGGGAAGCCATCATCAAAAGAAGTAAAGAAGAGCAAGGAAAGTTTTATCGACACATTGCAGAGAAAACTTAGAACCACTGATGGTAAAACAAACAGCAGATCAGGAGGGTCTCCGAGAAATTGCAACGACACAATTTCTGAGCAGGGATCTCGATCTCCTATTCTTTCAAGATCAGTTTCACCTTCCAAACAAGTTTCAAGATGTCAAAGCTTTTCTGAAAGGCCACAAGCACAACCTCTTCCACTTCCTGGTGTGCAGCCACCGATTGTAGGTCGTACAGACTCTGGGATTAGTATTTCACCAAAACCAAGATCTGAAAGGGGCTCCAAGCCATTATCATTTCTACCACTGCCGAGACCAGCATGTATCCCTAGGAGGCCAAACCATGCAGATTTAGATGCAGATCTTGGTGTTGGCTCAGTGTCTAGTGAGAGCTCAATTGATAGCACTGATCTGCCGGATTCACGCCATCGTAGTCCTCAGGCAACTGACTATGATCTTGGGACTAAAACTGCTGCAGGCAGTCCTTCCAGTGTCATTGTCAAGGATCAGTTTTCTATTGTCACCCCACCAAGTTCGCGAGAGGCAAGAAAACCAGCAAATATCTCATTGAGCAACCACATTTTCTCTACATCCCCCAAAAGGAGGCCTTTAAGCAGTCATGTTCCAAATCTTCAAGTTCCATATCATGGGAATTTATGCATTGCTCCAGACAGTTCAATGTCAAGCCCTTCTAGAAGTCCCATGAGGGCATTCAGCACAGAGCAAGTTATTAATAATGCTGTCAGTGCTGGAAAGCTCTATATGGATGTCACTTTTCCTGGATCAGGCCATTGTTCTAGTCCTGGTTCTGGTTACAATTCTGGGCATAATTCTATGGGTGGTGATTTGTCAGGGCAGTTATTTTTGCAACAAAGCCGGGGTAGCCCGGAATATTCCCCAGCACCCAGTCCCAGAATGACCAGTCCTGGCCCTAGCTCCAGAGTCCATAGTGGTGCAGTAACCCCAATTCATCCAAGGGCGGGAGGGATACCAACTGAGTCACAGACAAGCTGGCCTGATGAAAAGCAGACTCACCGCTTGCCTCTTCCTCCGGTTGCAATTTCCAATGCTCCTTTTTCTCATTCCAATTCAGCTGCAACATCTCCATCTGTCCCAAGAAGTCCTGGAAGGGCCGATAATCCAGCAAGCCCAGGCTCCCGTTGGAAAAAGGGGAAGCTTTTGGGTAGAGGCACTTTTGGGCATGTGTATGTTGGTTTTAACAGTGAAAGTGGTGAAATGTGTGCAATGAAGGAGGTCACATTATTTTCAGATGATGCAAAGTCCAAGGAGAGTGCCAAGCAATTAATGCAAGAAATTACCTTGTTGAGTCGTTTACGGCATCCAAATATTGTGCAGTATTATGGATCTGAAACGGTTGGCGACAGGCTTTACATTTACCTTGAATATGTATCTGGTGGCTCTATTTACAAGCTTCTCCAGGAATATGGACAGCTTGGCGATTCAGCACTTCGTAGTTATACTCAGCAAATATTGTCCGGGCTTGCATATTTACATGCTAAAAGTACTGTTCACAGGGATATCAAAGGAGCAAATATACTTGTTGATCCCACCGGGCGCGTTAAGTTGGCCGACTTTGGGATGGCAAAACATATCACTGGGCAATCATGCCCTTTGTCTTTTAAAGGCAGCCCGTACTGGATGGCACCTGAGGTCATAAAAAACTCAAATGGTTGTAACCTTGCGGTGGATATTTGGAGCCTTGGATGCACTGTTTTGGAGATGGCAACTACAAAACCTCCTTGGAGTCAATATGAGGGAGTCGCTGCAATGTTTAAGATTGGAAACAGCAAAGAACTTCCTGAAATACCGGATCATCTTTCACATGATGGAAAAGACTTTGTTAGACAATGTCTGCAACGGAATCCAGCTCATCGTCCTACAGCTGCTCAGCTTTTGGAGCATCCTTTTGTCAAATATGCTGCACCTCTTGAAAGACCCATTTTGGGTTCTGAACATACAGATCCAACTCCAGGAATTACAAATGGAGTAAGAACTCTGGGTATTGAGTCAGGAAGGAATCCCAGCTTCTTGGATTCTGATAGATCTGCAGCTCATTCATCTAGACTCTCGACAGCTGCTTTTCTTTCCAGTGAAATCCATATTCCAAGGAACCTATCATGTCCTGTTTCGCCCATTGGAAGTCCTCTGGTGCACTCTAGGTCGCCACAACATCCCAGTGGAAGAATGTCTCCGTCACCCATCTCTAGCCCTCGGAACATGTCAGGTGCATCCACTCCTCTCACAGGAGGAAGCGGTGCCATTCCACACCAGCACCTCAAACAATCACTGTACCTACAGGAGGGTTTTGGAAGCTTGCCAAAGCCTTCAATAGGCCCCTATAGTAACGGCCCTTCCTATCACGATTCAAACCCCGATATCTTTCAGGGGATTCAACCTGGCTCTCACATCTTCTCTGAGCAGTTTGGAAAGCCTGCCTGGGAATTGTATGACGGGCAGGCAGTCTTGGCTGATCGTGTTTCTAGGCAGTTGCTGAGTGATCACATAACAACTCCTTCCCTGGATTTAAGTCCGAGCTCTCTTTTGACCAACCGCAAGTAG | 2637 | 46.23 | MPSWWGKPSSKEVKKSKESFIDTLQRKLRTTDGKTNSRSGGSPRNCNDTISEQGSRSPILSRSVSPSKQVSRCQSFSERPQAQPLPLPGVQPPIVGRTDSGISISPKPRSERGSKPLSFLPLPRPACIPRRPNHADLDADLGVGSVSSESSIDSTDLPDSRHRSPQATDYDLGTKTAAGSPSSVIVKDQFSIVTPPSSREARKPANISLSNHIFSTSPKRRPLSSHVPNLQVPYHGNLCIAPDSSMSSPSRSPMRAFSTEQVINNAVSAGKLYMDVTFPGSGHCSSPGSGYNSGHNSMGGDLSGQLFLQQSRGSPEYSPAPSPRMTSPGPSSRVHSGAVTPIHPRAGGIPTESQTSWPDEKQTHRLPLPPVAISNAPFSHSNSAATSPSVPRSPGRADNPASPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLMQEITLLSRLRHPNIVQYYGSETVGDRLYIYLEYVSGGSIYKLLQEYGQLGDSALRSYTQQILSGLAYLHAKSTVHRDIKGANILVDPTGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPEIPDHLSHDGKDFVRQCLQRNPAHRPTAAQLLEHPFVKYAAPLERPILGSEHTDPTPGITNGVRTLGIESGRNPSFLDSDRSAAHSSRLSTAAFLSSEIHIPRNLSCPVSPIGSPLVHSRSPQHPSGRMSPSPISSPRNMSGASTPLTGGSGAIPHQHLKQSLYLQEGFGSLPKPSIGPYSNGPSYHDSNPDIFQGIQPGSHIFSEQFGKPAWELYDGQAVLADRVSRQLLSDHITTPSLDLSPSSLLTNRK | 878 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 370305 | 374992 | + | Lag0030681.1 | Lac11g0043 | 585901 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g0043 | 878 | MobiDBLite | consensus disorder prediction | 740 | 781 | - | - | |
Lac11g0043 | 878 | MobiDBLite | consensus disorder prediction | 34 | 81 | - | - | |
Lac11g0043 | 878 | FunFam | Mitogen-activated protein kinase kinase kinase | 405 | 687 | - | - | |
Lac11g0043 | 878 | SUPERFAMILY | Protein kinase-like (PK-like) | 405 | 754 | IPR011009 | - | |
Lac11g0043 | 878 | MobiDBLite | consensus disorder prediction | 24 | 179 | - | - | |
Lac11g0043 | 878 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 58 | 667 | IPR050538 | - | |
Lac11g0043 | 878 | MobiDBLite | consensus disorder prediction | 283 | 317 | - | - | |
Lac11g0043 | 878 | MobiDBLite | consensus disorder prediction | 283 | 410 | - | - | |
Lac11g0043 | 878 | MobiDBLite | consensus disorder prediction | 801 | 820 | - | - | |
Lac11g0043 | 878 | MobiDBLite | consensus disorder prediction | 742 | 777 | - | - | |
Lac11g0043 | 878 | SMART | serkin_6 | 407 | 663 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac11g0043 | 878 | Pfam | Protein kinase domain | 408 | 663 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac11g0043 | 878 | Gene3D | Transferase(Phosphotransferase) domain 1 | 405 | 679 | - | - | |
Lac11g0043 | 878 | ProSiteProfiles | Protein kinase domain profile. | 407 | 663 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac11g0043 | 878 | CDD | STKc_MEKK1_plant | 406 | 663 | - | - | |
Lac11g0043 | 878 | ProSitePatterns | Protein kinases ATP-binding region signature. | 413 | 436 | IPR017441 | GO:0005524(InterPro) | |
Lac11g0043 | 878 | MobiDBLite | consensus disorder prediction | 375 | 393 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g0043 | Lac-Chr11:370305 | Lac6g2641 | Lac-Chr6:44160082 | 5.50E-71 | dispersed | |
Lac11g0454 | Lac-Chr11:4736736 | Lac11g0043 | Lac-Chr11:370305 | 1.80E-50 | transposed | |
Lac12g2311 | Lac-Chr12:40265493 | Lac11g0043 | Lac-Chr11:370305 | 1.10E-74 | transposed | |
Lac1g2377 | Lac-Chr1:45087148 | Lac11g0043 | Lac-Chr11:370305 | 3.10E-119 | transposed | |
Lac1g2543 | Lac-Chr1:46808189 | Lac11g0043 | Lac-Chr11:370305 | 1.30E-95 | transposed | |
Lac2g1245 | Lac-Chr2:10155119 | Lac11g0043 | Lac-Chr11:370305 | 1.00E-51 | transposed | |
Lac6g0356 | Lac-Chr6:2949106 | Lac11g0043 | Lac-Chr11:370305 | 5.70E-95 | transposed | |
Lac8g1900 | Lac-Chr8:37256127 | Lac11g0043 | Lac-Chr11:370305 | 1.90E-69 | transposed | |
Lac11g0043 | Lac-Chr11:370305 | Lac5g2947 | Lac-Chr5:47502179 | 0.00E+00 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85721 | PF00069 | Pkinase | 1.00E-71 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g0043 | K20717 | - | csv:101222716 | 1654.42 |