Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0112 ATGGCCCAACTCGCTCAAGCATTGAAAGACATGGATCCGAAAGGTGTCCAGCTTGGGGCAGCTCCAAAATGCCAGTTTCCTGATGGGCACTTGGGAGCTGCAATAAACACTGGATTGTTTGATTATGTTTGGGTTCGATTCTACGACAGTCCTTCGCGCCAATTCAATGGTTCGAGCCTAGATAACCTCTTTAATGCATGGAATTTTTGGCAAGTGATTCCAGCTAAGGAAGTGTTCTTAGGACTAGCGGCAGATCCTGCTGCAGCGGCAGAGGGTGGATTTATTCCTACAAAGTTGGTTGTTTCCGATGTTCTTCCACAAATTACGGATTCTGCCTTGTATGGAGGAGTTATGCTTTGGAGTAAGGAATTCGACCATGGATATAGTGATGAAATTAAGGACTTCGTCTAA 411 45.26 MAQLAQALKDMDPKGVQLGAAPKCQFPDGHLGAAINTGLFDYVWVRFYDSPSRQFNGSSLDNLFNAWNFWQVIPAKEVFLGLAADPAAAAEGGFIPTKLVVSDVLPQITDSALYGGVMLWSKEFDHGYSDEIKDFV 136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1027551 1027961 - Lag0030750.1 Lac11g0112 585970

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0112 136 SUPERFAMILY (Trans)glycosidases 3 127 IPR017853 -
Lac11g0112 136 Gene3D Glycosidases 1 136 - -
Lac11g0112 136 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 1 136 IPR001223 GO:0005975(InterPro)
Lac11g0112 136 PANTHER ENDOCHITINASE 2 134 IPR050542 GO:0004568(PANTHER)|GO:0005576(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0112 K01183 - - mdm:103426493 138.658
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0112 Lac-Chr11:1027551 Lac7g0189 Lac-Chr7:1488069 1.90E-34 dispersed
Lac11g0112 Lac-Chr11:1027551 Lac11g0117 Lac-Chr11:1072120 7.60E-36 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g994 Blo06g01054 Blo15g00077 . Bda07g01950 . Bpe07g01027 . Bma14g02021 Cmo16g00035 Cmo18g01364 Cma02g01138 Cma15g01011 Car02g00942 Car15g00945 . Cpe05g00585 Cpe14g00023 Bhi01g01520 . . . . Mch10g0036 . Cla01g00024 . . . . . . . . . . . . . Cme06g01170 . Blo09g00009 . Bda15g00794 . Bpe12g00340 . Bma12g01222 . Cmo02g01169 Cmo15g01074 Cma16g00030 Cma18g01333 Car16g00027 Car18g01248 Cpe09g00014 Cpe13g00326 Bhi12g00680 . . Lac11g0112 Hepe06g0815 . Lcy12g0093 Cla05g00988 Cam05g1079 Cec05g1087 Cco05g1081 Clacu05g1073 Cmu05g1023 Cre05g1097 Lsi09g00005 Csa03g01964 Chy06g01176 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000249 3 4 6 5 2 6 3 6 6 7 3 6 2 6 6 4 6 8 2 6 6 5 4 7 7 7 4 5 6 8 156