Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0122 ATGAGGGCCTGTTTGAAGAAAAACCTCCCGCGGAGCAGAAGAGAATGTGATACGATACCCTTATTGGTTTCAGAGGAGTTGCTTTTGCTTTTACAAATTTCTATCTCAAAGACGAATGGTGTGGCTTTAAGTTCATGTTATCACTTTCAAATAAAGCATGTTCTGTATCTCTCAAATTCAGCAAAAGCAATCAGACATGATACCATGGTCCGTGAGAAAGATATTTGTTGGGAATATGCCGAGAAATTAGATGGTAATAAGGTAAAGTGCAAATTTTGTCTTAGAGTTTTGAATGGTGGAATTAGTAGATTGAAGCATCATTTATCTCGACTACCAAGTAGAGGTGTAAATCCATGTAGTAAAGTGAGGGACGATGTTTCTGATAGAGTGAGAGCCATACTAGCGACTAGGGAGGAGATCAAGGAAACATCTAGTGGGAAAAAGCAGAAGCTAGCTGAAGTCAAAATTGTTGAAAATGCACCATCAATGTGTAAATCTGTTGTCACAATGGAGGCCCCATCTCCAATTGCCAAAGTTTTTCCAGCTGTTACTCCCATGGCACCCCCATCATTACACAACCATGAAAATGCTGAGAAAAGCATTGCTTTATTCTTTTTTGAGAATAAGCTAGACTTTAGTATAGCTAGATCTTCATCCTATCAGTCAATGATTGATGCGATAGGGAAATGTGGCCCAGGATTTACGGGCCCTTCTGCTGAAACCTTGAAGACTACTTGGTTGGAGAGAATCAAAACTGAAGTGAGCCTTCAGTCAAAGGATATTGAGAAAGAGTGGGCTACCACCGGCTGCACAATCATTGTAGACACGTGGACTGACAATAAATCAAGAGCCTTGATTAATTTTTTGGTTTCATCCCCATCCCGGACCTTCTTTCACAAATCCGTTGATGCATCTGCATATTTCAAGAACACAAAGTGCCTTGCTGATTTATTTGATTCTGTCATTCAAGATTATGGCCATGAAAATGTAGTGCAGATAATCATGGACAGTAGTTTCAACTATACAGGTATTGCGAATCATATCCTTCAGACTTACGGAACTATATTTGTGTCTCCTTGTGCTTCGCAGTGTCTGAATTCAATTTTGGAGGAATTTTCAAAGGTAGATTGGGTAAACAGATGTATCTTGCAAGCACAAACCATATCAAAATTTCTATATAATAGTTCCTCACTGCTTGACTTGATGCGAAGGTTCACTGGCGGTCAAGAACTCATTCGGACTGGGATATCGAAACCCGTATCAAGCTTCCTGTCTCTGCAATCTATTCTGAAGCAAAGGTCAAGACTGAAGCATATGTTCAACAGCCCTGAATACACCACAAATTCTTATGCAAATAAACCACAGAGCATTTCTTGTATTGCCATTATAGAAGACAATGATTTCTGGAGGGCAGTGGAAGAATGTGTGGCAATATCAGAGCCTTTCCTAAGAGTGTTGAGGGAAGTGTCTGGGGGTAAACCTGCTGTTGGATGTATATATGAGTTAATGACTAGAGCAAAAGAATCGATACGAACTTACTATATAATGGATGAGATCAAGTGCAAGACGTTTCTCGATATCGTTGACAGAAAGTGGCGGGATCAACTTCATTCCCCACTTCACGCAGCAGCAGCATTCTTGAACCCCAGTATTCAGTACAATCCAGAAATAAAGTTTATTACTTCCATTAAAGAAGACTTCTTCAAGGTATTGGAGAAATTACTCCCCTTGCCAGAGATGAGACGTGATATTACCCATCAAATATTTACTTTTACGAAGGCCAATGGGATGTTTGGATGCAGTTTAGCGATGGAAGCAAGAGATACGGTTTCACCTTGGCTTTGGTGGGAACAGTTTGGTGACTCTGCACCTGTGTTACAACGAGTTGCAATACGGATTCTCAGTCAAGTTTGCAGTACTTTCTCTTTCGAGAGGCATTGGAGCACGTTTCAGCAAATTCACTCCGAAAAACGTAATAAGATCGACAAGGAAACGCTGAATGACCTTGTCTACATAAACTACAATCTCAAGTTGGCCAGACAGATGAGAACAAAGCCCCTAGAATCTGACCCTATCCAGTTTGATGACATTGACATGACTTCGGAGTGGGTAGAGGAGAGCGAAAACCCAAGCCCGACGCAATGGCTCGACCGATTTGGTTCTTCTTTGGACGGGGGCGACTTGAATACCAGACAGTTCAATGCTGCCATATTTGGTGCAAGTGACCACATATTCAATCTGTGA 2244 41.18 MRACLKKNLPRSRRECDTIPLLVSEELLLLLQISISKTNGVALSSCYHFQIKHVLYLSNSAKAIRHDTMVREKDICWEYAEKLDGNKVKCKFCLRVLNGGISRLKHHLSRLPSRGVNPCSKVRDDVSDRVRAILATREEIKETSSGKKQKLAEVKIVENAPSMCKSVVTMEAPSPIAKVFPAVTPMAPPSLHNHENAEKSIALFFFENKLDFSIARSSSYQSMIDAIGKCGPGFTGPSAETLKTTWLERIKTEVSLQSKDIEKEWATTGCTIIVDTWTDNKSRALINFLVSSPSRTFFHKSVDASAYFKNTKCLADLFDSVIQDYGHENVVQIIMDSSFNYTGIANHILQTYGTIFVSPCASQCLNSILEEFSKVDWVNRCILQAQTISKFLYNSSSLLDLMRRFTGGQELIRTGISKPVSSFLSLQSILKQRSRLKHMFNSPEYTTNSYANKPQSISCIAIIEDNDFWRAVEECVAISEPFLRVLREVSGGKPAVGCIYELMTRAKESIRTYYIMDEIKCKTFLDIVDRKWRDQLHSPLHAAAAFLNPSIQYNPEIKFITSIKEDFFKVLEKLLPLPEMRRDITHQIFTFTKANGMFGCSLAMEARDTVSPWLWWEQFGDSAPVLQRVAIRILSQVCSTFSFERHWSTFQQIHSEKRNKIDKETLNDLVYINYNLKLARQMRTKPLESDPIQFDDIDMTSEWVEESENPSPTQWLDRFGSSLDGGDLNTRQFNAAIFGASDHIFNL 747
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1124900 1128351 - Lag0030760.1 Lac11g0122 585980

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0122 747 PANTHER OSJNBA0013A04.12 PROTEIN 68 710 - -
Lac11g0122 747 ProSiteProfiles Zinc finger BED-type profile. 71 126 IPR003656 GO:0003677(InterPro)
Lac11g0122 747 Pfam Protein of unknown function (DUF 659) 237 388 IPR007021 -
Lac11g0122 747 Pfam hAT family C-terminal dimerisation region 608 676 IPR008906 GO:0046983(InterPro)
Lac11g0122 747 Pfam BED zinc finger 77 110 IPR003656 GO:0003677(InterPro)
Lac11g0122 747 SUPERFAMILY Ribonuclease H-like 259 679 IPR012337 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0122 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0122 Lac-Chr11:1124900 Lac5g0486 Lac-Chr5:5475374 1.30E-132 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g860 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe12g00364 . . . . . . . . . . Cpe13g00301 Bhi12g00598 . . Lac11g0122 . . Lcy12g0101 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001826 2 4 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 8 3 1 67