Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0124 ATGAGCTTCGAAAGGAAGCTCGATCTTGTCGTATTTGTTTTCTCTGCAGTCTTCTTGTTCGCAGCGACTTTTTATCCAGTCATGTCGGAGCCGATCGAAGACAAGGAAGCTCTGCTTGATTTTCTCAACAAGATGGATCACTCACACTCGCTCAATTGGAAGAAGAACACTTCTTTGTGCAAAGAATGGATGGGAGTTCAGTGCAACAGAGATGAATCTCGAGTTATAGCTCTGCGATTGGCTGAAGTTGGATTACATGTTTCGATCCCGATCAACACTCTTGGTCGACTATCGGCAATCGAAACTCTAAGCCTTGGATCAAATTACATATCAGGGTCTTTCCCTTCCGACTTCCAAAAGCTGGGAAATCTCAACTCACTCTACTTGCAAAACAACAAGTTTTCTGGTCCATTGCCATTGGATTTCTCAGTATGGAAGAATCTCAACATCATTGATTTGTCAAACAATGCCTTCAATGGGAGCATACCTCGCTCGATTTCGCACACGACGCATCTAACGACTTTAAACCTTGCCAATAACTCACTCTCTGGTGAGATTCCGGACCTCCACCTTCCAAGTTTGCAAGAGCTGGATCTTTCAAACAACAAACTCACAGGCTATGTCCCTCAGTCCCTCAAAAAATTTCCAAGTCGGGCATTCTCCGGTAACAACCTCATGCTCGAAAATGCCGTTCCTCCAGCTCGTCTTAGTCCGTCGCCCAATGCCCAACTGTTGAAGAAAGGCACAACATCACTTGGTGAAGCAGCAATTCTAGGCATTATAATTGGAGGTTCTGCAATGGGGTTGGTTATAGCAGCCATCTTGATGGTTATGTTCTGCTCAAACAGAGGAGTTAAGAACAAAGCCTCATCAAAACTGGACAAACAAGAACTCTTTGTGAAGAAAAGGGTGTCTGAGACACAAAGCAACAATCTCAAGTTTTTTCAGAATCAGAGCCTCGAGTTCGACTTGGAGGACTTGTTGAGGGCGTCCTCCGAGGTGCTCGGGAAGGGGACGTCCGGGACAACGTATAAGGCGACTTTAGAAGACGGTAATGCCGTTGCGGTGAAGAGGTTGAAAGAAGTGAGCGCTTCGAAGAAGGAATATGAGCAGCAGATGGAGGTGCTTGGGAGCATTGAACATGAAAATGTGTGTGCTTTAAGGGCATATTACTATTCAAAGGATGAGAAACTCATGGTCTTTGACTTCTACCAACATGGAAGTGTCTCTGCAATGTTGCATGTTGCGAGAGAGAAAGGGCAGTCGCCTCTTGACTGGGAAACTCGACTGCGAATCGCCATTGGAGCAGCCAGAGGAATCGCTCACATCCACTCAGAAAACTGCGGCAAACTCGTCCATGGCAACATCAAGGCCTCAAACGTCTTCCTCAACTCCGCCGGCTACGGTTGCGTCTCCGACGCTGGCGTCGCCGCTTGGATGAACCTCATGACTCCGCCGGCCACCAGAGCCGCCGGATACCGCGCTCCCGAACTCAAAGACTCTCGCAAAGCATCTCAAGCCTCCGATACCTACAGCTTCGGCGTCGTGCTTCTCGAGCTCCTCACCGGAAAATTCCCGCTGCATACGAAGAACGGCGGCGGCGATCAGATCATCCACCTGGTGCGGTGGGTGAACGCGGTGGTCCGAGAGGAGTGGACGGCGGAGGTGTTCGATGTGGAGCTTTTGAGGTATCCGAACATAGAGGAGGAGATGTTAGAGACGCTGCAAATAGCGCTGTCTTGTGTAGGAAGAGTTCCGGATGATCGGCCGGCAATGGCGGAAGTTGCGGCTCGTTTGGAGGGAGTTCGCCGGGTGAGCGGCGGAGGAGACCCACCGGAGCCGCCGCCGCCGCCGCCATTGGAACGCGGAGCGGAGGATTCGATCCAGATTCAGGTGAATGTGGCTGAGGGTGAAGATGGAGCTCTGTCGAGATTGAATTGA 1941 50.23 MSFERKLDLVVFVFSAVFLFAATFYPVMSEPIEDKEALLDFLNKMDHSHSLNWKKNTSLCKEWMGVQCNRDESRVIALRLAEVGLHVSIPINTLGRLSAIETLSLGSNYISGSFPSDFQKLGNLNSLYLQNNKFSGPLPLDFSVWKNLNIIDLSNNAFNGSIPRSISHTTHLTTLNLANNSLSGEIPDLHLPSLQELDLSNNKLTGYVPQSLKKFPSRAFSGNNLMLENAVPPARLSPSPNAQLLKKGTTSLGEAAILGIIIGGSAMGLVIAAILMVMFCSNRGVKNKASSKLDKQELFVKKRVSETQSNNLKFFQNQSLEFDLEDLLRASSEVLGKGTSGTTYKATLEDGNAVAVKRLKEVSASKKEYEQQMEVLGSIEHENVCALRAYYYSKDEKLMVFDFYQHGSVSAMLHVAREKGQSPLDWETRLRIAIGAARGIAHIHSENCGKLVHGNIKASNVFLNSAGYGCVSDAGVAAWMNLMTPPATRAAGYRAPELKDSRKASQASDTYSFGVVLLELLTGKFPLHTKNGGGDQIIHLVRWVNAVVREEWTAEVFDVELLRYPNIEEEMLETLQIALSCVGRVPDDRPAMAEVAARLEGVRRVSGGGDPPEPPPPPPLERGAEDSIQIQVNVAEGEDGALSRLN 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1135943 1138665 + Lag0030762.1 Lac11g0124 585982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0124 646 ProSiteProfiles Leucine-rich repeat profile. 171 192 IPR001611 GO:0005515(InterPro)
Lac11g0124 646 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 404 608 - -
Lac11g0124 646 MobiDBLite consensus disorder prediction 601 626 - -
Lac11g0124 646 Gene3D Transferase(Phosphotransferase) domain 1 404 606 - -
Lac11g0124 646 SUPERFAMILY L domain-like 48 215 - -
Lac11g0124 646 FunFam Probable inactive receptor kinase RLK902 31 190 - -
Lac11g0124 646 FunFam pollen receptor-like kinase 1 299 403 - -
Lac11g0124 646 Gene3D Ribonuclease Inhibitor 32 255 IPR032675 -
Lac11g0124 646 Pfam Leucine Rich repeats (2 copies) 170 205 IPR025875 -
Lac11g0124 646 ProSiteProfiles Protein kinase domain profile. 329 602 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g0124 646 Pfam Leucine Rich Repeat 123 143 IPR001611 GO:0005515(InterPro)
Lac11g0124 646 Pfam Leucine Rich Repeat 100 121 IPR001611 GO:0005515(InterPro)
Lac11g0124 646 Pfam Leucine Rich Repeat 147 168 IPR001611 GO:0005515(InterPro)
Lac11g0124 646 Pfam Protein kinase domain 332 595 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g0124 646 Coils Coil 352 372 - -
Lac11g0124 646 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524(InterPro)
Lac11g0124 646 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Lac11g0124 646 SUPERFAMILY Protein kinase-like (PK-like) 314 600 IPR011009 -
Lac11g0124 646 PRINTS Leucine-rich repeat signature 191 204 - -
Lac11g0124 646 PRINTS Leucine-rich repeat signature 172 185 - -
Lac11g0124 646 Gene3D Phosphorylase Kinase; domain 1 294 403 - -
Lac11g0124 646 PANTHER OS05G0588300 PROTEIN 17 610 IPR050994 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0124 Lac-Chr11:1135943 Lac11g2027 Lac-Chr11:35855030 3.40E-158 dispersed
Lac11g0124 Lac-Chr11:1135943 Lac5g2999 Lac-Chr5:47933678 1.00E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85722 PF00069 Pkinase 1.40E-32 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0124 - - - 0.0