Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0127 ATGGCGAAGCATAGAGTAATAATCTCTGCATTCATAGCTGTGTTGTTCATCAAGTGTTCGTTGATCAAGTCCTCCAATGCAGCTGGACTTGCCATTTATTGGGGAGATAGTAACTACGAAGACAGCCTTCAATCCACATGTGCCACAGGAAACTTCAAGTATGTAAGCATAAATCTTCAAGCTCATTGCAACCCCTACGTTAGATACGGCTGCCGAGGCCTCGGCGTCGAGATCAAAGCTTGCCAAAGCCTCGGCGTCAAAGTCCTCCTCTCGCTCGGAAGTCGCTACTTGCTCTCCGCTCGTAACTATGACGATCCGAGACGATACGCTCGGTACATCATTCGCAACTACCTTGGAGGTGATCCCTCGTCGAGTTCACGCCCCTTTGGAGATGCCATCTTGGATGGAATTGATTTTAGTAGTCCCTATGGGTCGTCTAAATATTGGCGCATCGTTGCCGAATCGCTCAAGGATGATAACAACCAAACCATCCTTGCTGCAGCTCCCGGTTGCCAATATCCCGACGCCACACTCGGCCCTGTCATTGATGCAGGTCTGTTTGATTCGATTTGGGTGAAATTCTTCGACAACGGTCTGTGCCAATACGACGATAGTTACTACGGGAGTGGTGCTCGTAATCTGCTGAATACATGGTCAAAATGGGAGAGAGGTTACGACGGAGAGTTGTATATGCAACTGCCTGCGGCACCACAAGCTACAAGGTGGGGCGGATATATTCCTCCAGATGAGCTGATTAATAACATTATTCCAAAGCTTGAAAAAACTCCCAATTATGGAGGAGTTATGCTTTGGAATAGGTTTTATGATGTGTCAGGTGGAAATTATAGCAATGCCATTGCAGGGCCAGTCATTGGAAATGGTTCCTTCATTGCAACCTCTTAG 903 47.4 MAKHRVIISAFIAVLFIKCSLIKSSNAAGLAIYWGDSNYEDSLQSTCATGNFKYVSINLQAHCNPYVRYGCRGLGVEIKACQSLGVKVLLSLGSRYLLSARNYDDPRRYARYIIRNYLGGDPSSSSRPFGDAILDGIDFSSPYGSSKYWRIVAESLKDDNNQTILAAAPGCQYPDATLGPVIDAGLFDSIWVKFFDNGLCQYDDSYYGSGARNLLNTWSKWERGYDGELYMQLPAAPQATRWGGYIPPDELINNIIPKLEKTPNYGGVMLWNRFYDVSGGNYSNAIAGPVIGNGSFIATS 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1152574 1154721 - Lag0030765.1 Lac11g0127 585985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0127 300 SUPERFAMILY (Trans)glycosidases 27 282 IPR017853 -
Lac11g0127 300 Gene3D Glycosidases 29 287 - -
Lac11g0127 300 PANTHER ENDOCHITINASE 12 287 IPR050542 GO:0004568(PANTHER)|GO:0005576(PANTHER)
Lac11g0127 300 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 28 300 IPR001223 GO:0005975(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0127 K01183 - - csv:101214892 248.825
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0127 Lac-Chr11:1152574 Lac11g0131 Lac-Chr11:1203111 1.30E-59 dispersed
Lac11g0126 Lac-Chr11:1146952 Lac11g0127 Lac-Chr11:1152574 5.40E-34 tandem
Lac11g0127 Lac-Chr11:1152574 Lac11g0128 Lac-Chr11:1166602 7.70E-65 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g841 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag0950 . Cone14ag0042 Cone15ag0044 . Csa05g00081 Chy09g01410 Cme06g01062 . . . . . . . . . Cmo02g01119 . . . . . . . Bhi12g00606 . . Lac11g0127 . . Lcy12g0107 . . . . . . . Lsi09g00044 . Chy06g01275 Cme09g01954
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0020956 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 1 0 0 0 4