Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0131 ATGGCGAACCATAGCTCAACGATCTCAGCAATCTCTTTAGCTTTGTTGTTTCTGAGTTGCTTGTTCAAGTCCTTCAATGCAGCTGGCATTGGAGTCTACTGGGGCCAAAATAGCACAGAAGGCAGCATTCTTGCTGCCTGCAAAACATCAAACTACAAATACCTCAGCATAGCTTTCTTGTCCTCCTTCGGCGGCGGCCAATTTCCGGAACTCAGTCTTTTACATTGCGATACAAAACATCGCGGCGGCTGCTGGTCGGTCGGTGACGAGATCAAAGGTTGCCAAAGTCTAGGCATCAAAGTCTTCCTCTCAATCGGAGACGGCGGAGGCGGGAACTACACGCTCTCCTCCGCCGATGATGCTAGGATTGTGGCAAGGTACATCAAGAACTACTACCTCACCGGCAAGCGCGGTATTCAGATATTTGGAGACGCCATGTTGGATGGCATTGAGTTCAATATTCAAGGTGCTGGTTCCAACTTGTACTGGGATGTACTGGCTCAAGCCCTGAAAGAAGATACAAAAGACCTTCTTCTTGCAGCAACTCCACAATGCCTGTATCCTGACTACTATTTGAATGCCGCCATAGATACAGGTCTATTTGATTACATTTGGGTTAAATTCTACAACAACGTAAAATGTCAGTATCCCGATCAGAATATCCAATTTTTAGTGGACTCATCAGTAGCATGGTCGAACAAGCTCAGTGATAATGGACATGTATTTTTAAATTTACCTGCAGCAGAAGAAGCTGCACAAAGTGGATACATTCCTCCAGACTATCTTGTTTCTACAGTTATTCCAGCCATCAACAACAATATTACTTCCAAGTTTGGAGGGGTAATGCTGTGGAACAGATTATATGATAATGGCAATAAATATAGTGATACCATTAAACCTTACTTGCCGCCTACAAAACCTAGCTTTTCAATGGATATGTAA 942 43.95 MANHSSTISAISLALLFLSCLFKSFNAAGIGVYWGQNSTEGSILAACKTSNYKYLSIAFLSSFGGGQFPELSLLHCDTKHRGGCWSVGDEIKGCQSLGIKVFLSIGDGGGGNYTLSSADDARIVARYIKNYYLTGKRGIQIFGDAMLDGIEFNIQGAGSNLYWDVLAQALKEDTKDLLLAATPQCLYPDYYLNAAIDTGLFDYIWVKFYNNVKCQYPDQNIQFLVDSSVAWSNKLSDNGHVFLNLPAAEEAAQSGYIPPDYLVSTVIPAINNNITSKFGGVMLWNRLYDNGNKYSDTIKPYLPPTKPSFSMDM 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1203111 1204926 + Lag0030769.1 Lac11g0131 585989

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0131 313 Gene3D Glycosidases 29 302 - -
Lac11g0131 313 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 28 305 IPR001223 GO:0005975(InterPro)
Lac11g0131 313 PANTHER ENDOCHITINASE 10 300 IPR050542 GO:0004568(PANTHER)|GO:0005576(PANTHER)
Lac11g0131 313 SUPERFAMILY (Trans)glycosidases 29 299 IPR017853 -
Lac11g0131 313 Pfam Glycosyl hydrolases family 18 31 235 IPR001223 GO:0005975(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0131 K01183 - - cit:102607011 276.174
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0127 Lac-Chr11:1152574 Lac11g0131 Lac-Chr11:1203111 1.30E-59 dispersed
Lac11g0131 Lac-Chr11:1203111 Lac5g2994 Lac-Chr5:47898495 5.00E-67 dispersed
Lac11g0128 Lac-Chr11:1166602 Lac11g0131 Lac-Chr11:1203111 1.30E-78 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g840 . . . . . . . . Cmo16g00088 . . . . . Sed02g1729 . Cpe14g00068 Bhi01g01432 Tan01g0168 Cmetu06g2105 Lac11g0131 Hepe07g0103 Mch10g0105 . Cla01g00072 Cam01g0072 Cec01g0073 Cco01g0073 Clacu01g0073 Cmu01g0074 Cre09g2436 . Cone5ag0662 . Cone15ag0046 Lsi05g01172 Csa05g00082 Chy09g01409 Cme06g01060 . . . . . . . . . Cmo02g01118 . Cma16g00085 . Car16g00074 . . . . . . . . . . Cla05g00936 Cam05g1024 Cec05g1028 Cco05g1024 Clacu05g1013 Cmu05g0966 Cre05g1047 Lsi09g00052 . . Cme09g01953
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023921 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 3