Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0134 ATGAACTCGTTGGCGGTGCGGATGGTGAAATCGGAGCGAGGGCATGATTCTTGGATTGCCTCGGAGGAGGCAGCTCAGACGATCGAGACAGATGGGCGTGATTCTTCGGTGTTGGTTGTCGAGAGTGATGGTGTGCGCCTTTCTGCTTCTCCGTCTCAGCCGTCGAATGATAACGCTCCTGATGGTAAATTGGGGTTTGGAGAACGAGCTGTCTCTGCTGCTGGTGCCGCCTTTCTCTCGGCGATAATTGTAAATCCTCTTGATGTTGCCAAGACAAGGTTGCAGGCTCAAGCTGCAGGAGTTCCTTATTCGCATCCACTTAGTGATTGGACCAGTCGCATGGCATTTTTTGGACCAAAAACGATGTTTGCAGATTTAAGGTGTTCTCCTTCATGTGCTCGTGCGGGGATTCATGGTACAGTAGCAATATGTCCTCCTGATTGTTTTCAGTACAAAGGGACGCTGGACGTCTTCTACAAAATCATCCGACAGGAAGGATTTGCGAGGTTGTGGAGAGGCACAAATGCTGGCTTAGCTCTTGCTGTTCCCACGGTGGGAATCTACCTACCTTGCTATGACATATTCCGTAACTGGTTAGAAGAGATCACTACCAAGAATCTTCCTAGTGCTACTCCTTATGTTCCTTTAGTTGCTGGGTCATTGGCTCGTTCTTTGGCTTGTGCAACTTGTTATCCAATTGAGCTTGCTAGAACTCGCATGCAGGCATTTAAGGAGATGCGAATTGGCAAGAAGCCGCCTGGAGTCTGGCAGACTTTACTTGGTGTCGTCTCCAATGTAAAGAGCACAACTAATGGTGAAATTACCTCAGCAAAAAGTTATCGTGCCCTATGGACTGGAATGGGGGCACAGCTTGCACGTGATGTTCCATTCTCAGCAATTTGTTGGTCAACCCTTGAACCAGTCAGAAGGAAACTACTTGGATTGGTAGGTGATGAAGCTAATGCAGCCAGTGTGTTTGGGGCCAACTTTTCTGCTGGTTTTGTTGCTGGAAGTCTTGCTGCTGCCGCTACATGTCCCCTGGATGTTGCAAAAACCCGACGGCAGATAGAGAAGGATCCAGTGAGGGCACTGAGAATGACAACAAGGCAGACACTAATGGAGGTTTGGAGGGATGGTGGGATGAAAGGACTATTTGCAGGAGTTGGACCTCGTGTTGGTCGTGCAGGCCCATCAGTTGGGATTGTGGTATCATTTTACGAAGTTGTGAAATATGTTCTTCATCACCAATATCCAACTTCATGA 1263 48.3 MNSLAVRMVKSERGHDSWIASEEAAQTIETDGRDSSVLVVESDGVRLSASPSQPSNDNAPDGKLGFGERAVSAAGAAFLSAIIVNPLDVAKTRLQAQAAGVPYSHPLSDWTSRMAFFGPKTMFADLRCSPSCARAGIHGTVAICPPDCFQYKGTLDVFYKIIRQEGFARLWRGTNAGLALAVPTVGIYLPCYDIFRNWLEEITTKNLPSATPYVPLVAGSLARSLACATCYPIELARTRMQAFKEMRIGKKPPGVWQTLLGVVSNVKSTTNGEITSAKSYRALWTGMGAQLARDVPFSAICWSTLEPVRRKLLGLVGDEANAASVFGANFSAGFVAGSLAAAATCPLDVAKTRRQIEKDPVRALRMTTRQTLMEVWRDGGMKGLFAGVGPRVGRAGPSVGIVVSFYEVVKYVLHHQYPTS 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1229495 1234428 + Lag0030772.1 Lac11g0134 585992

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0134 420 Gene3D Mitochondrial carrier domain 131 419 IPR023395 -
Lac11g0134 420 SUPERFAMILY Mitochondrial carrier 64 408 IPR023395 -
Lac11g0134 420 PANTHER FI19922P1-RELATED 51 416 IPR045315 GO:0005739(PANTHER)|GO:0006810(PANTHER)|GO:1990542(InterPro)
Lac11g0134 420 ProSiteProfiles Solute carrier (Solcar) repeat profile. 64 198 IPR018108 -
Lac11g0134 420 Gene3D Mitochondrial carrier domain 43 123 IPR023395 -
Lac11g0134 420 ProSiteProfiles Solute carrier (Solcar) repeat profile. 210 311 IPR018108 -
Lac11g0134 420 ProSiteProfiles Solute carrier (Solcar) repeat profile. 324 412 IPR018108 -
Lac11g0134 420 Pfam Mitochondrial carrier protein 326 415 IPR018108 -
Lac11g0134 420 Pfam Mitochondrial carrier protein 211 312 IPR018108 -
Lac11g0134 420 Pfam Mitochondrial carrier protein 64 101 IPR018108 -
Lac11g0134 420 Pfam Mitochondrial carrier protein 152 200 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0134 K15119 - - csv:101220455 739.184
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0134 Lac-Chr11:1229495 Lac7g0180 Lac-Chr7:1446825 4.90E-142 dispersed
Lac11g0134 Lac-Chr11:1229495 Lac6g1022 Lac-Chr6:9331240 6.60E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g803 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00223 Cam01g0230 Cec01g0221 Cco01g0231 Clacu01g0225 Cmu01g0218 Cre09g2292 . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g00611 . . Lac11g0134 . . Lcy12g0114 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003249 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 11 3 1 49