Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0144 ATGGTTTCTTCTCCTTTTCCCTCAAAGGCCCATGGAGTTCCCTCAAGAGAAGGCGTGTCAACCAAAGAAGTATTTGGACTGTATGACATTACAATTCAGATAGTTATCATGACTTATCTGCAGGAGAAGATTGTGAGGTTTCAGGACTGGAGTTCAGATAAAACTTCAAGGGGGTTATATTCTGCAGATAACACTTTAAATACTGGAAAGAATGGGACAAGAGCTGACTTAGTTTCAGAAAAGCCTTTCAAAGAATTGGAAACTGGTTCTTACAGGTTTAATAGAATAAAGAAATCCTTGAAGTCGTCTTCTTTCAATAAGTTTGTGTCCAGAGGTTTTGGAACCGGAAAAAATGTACTTGACCCACAGGGGCCCTTTCTCCAGAAGTGGAATAAGATATTTGTGTTGTCTTGTGTGATTGCTGTTTCATTGGATCCTTTGTTCTTTTATGTCCCTGTGATTGATGATGAGAAGAAATGTCTTGGGTTGGACAAGAAGATGGAGATTACAGCCAGTGTATTACGTTCATTCACTGACATATTTTATATATTGCATATTGTTTTTCAATTCCGTACGGGATTTATCGCTCCTTCTTCTCGAGTATTTGGAAGAGGTGTTCTAGTTGAAGATGCTTGGGCAATTGCAAAGAGATATCTGTCATCATACTTTTTGATCGACATTCTTGCAGTCCTCCCACTTCCACAAGTAGTGATTCTGATCATTATTCCAAACATGAAAGGCTCAAGGTCGTTGAATACTAAGGACTTGCTGAAATTTGTTGTTTTCTTCCAATATGTACCAAGGTTCATTAGAATCTATCCTTTATATAAAGAAGTTACAAGAACATCGGTACTCACTGAAACTGCATGGGCTGGAGCTGCATTTAATCTCTTTCTCTACATGCTGGCAAGTCATGTCTTTGGAGCATTTTGGTACTTGTTTTCTATAGAGCGGGAAACTACATGCTGGCAGAAGGCTTGTCGTAATCATACTGGCTGTGTTTCTAATTCACTATATTGTGATGTCAGTCCTGGAAACAACGCATTTTTAAATACTTCATGTCCTACAGTTGGTGGAGACAACCCACCTTTTGATTTTGGAATATTTCTTGATGCTCTTAATTCTGGTGTTGTGGAGTCGATGGATTTTCCACAGAAGTTCTTTTACTGTTTCTGGTGGGGGCTGAGAAATCTAAGTTCCCTGGGTCAAAATCTCCAAACAAGCACATACGTATGGGAAATTTGCTTTGCTGTTTTCATCTCCATCTCTGGCTTAGTTCTGTTTTCATTTCTCATCGGGAACATGCAGACATATTTGCAATCCACCACTACAAGATTGGAAGAGATGAGGGTTAGAAGAAGAGATGCAGAACAATGGATGTCCCACCGTTTACTCCCTGAAAGCCTCCGAGAGCGAATCAGGAGGTATGAACAGTACAAGTGGCAGGAAACCAGAGGTGTTGATGAAGAGAATTTGGTTCGAAATCTTCCAAAAGATCTCAGAAGGGACATAAAACGCCATCTTTGTCTGTCTCTGCTCATGAGGGTACCGATATTTGAAAAAATGGACGAACAATTGTTGGATGCTATGTGTGACCGTCTCAAGCCAGTACTATACACAGAAGAAAGTTACATCGTTAGGGAAGGAGACCCGGTAGACGAGATGATCTTCATTATGCGAGGCAAGTTATTGTCTGTAACTACAAATGGTGGAAGAACTGGTTTCTTTAATTCTGAACACCTCAAGGCGGGTGATTTCTGTGGAGAAGAGTTACTGACATGGGCTCTGGATCCACATTCCTCATCCAATCTACCAATTTCGACAAGAACCGTGCGAACTCTTTCAGAAGTTGAAGCATTTGCTTTAAAGGCAGATGACTTGAAGTTTGTAGCCTCACAGTTCCGACGGCTTCACAGCAAGCAACTACGGCACACTTTCAGGTTCTACTCACAGCAATGGAGAACATGGGCAGCGTGTTTTATACAAGCAGCATGGCGTCGATACAGAAGAAAGAAGCATGAACAGGCCCTCTTGGAAGAAGAGAACAGATTAAAAGATGCATTGGCCAAGACAGGTGGGAATTCTCCTAGTTTAGGTGCCACCATCTACGCATCCAGATTTGCAGCTAACATCCTTAGAACGATTCGACGCACAAGCTCGCGGAAGGCCAGGATTCCAGAGAGAATACCGCCCATGTTGCTTCAGAAACCAGCAGAGCCTGATTTTACCTCTGAAGAGAATAGTTGA 2247 41.66 MVSSPFPSKAHGVPSREGVSTKEVFGLYDITIQIVIMTYLQEKIVRFQDWSSDKTSRGLYSADNTLNTGKNGTRADLVSEKPFKELETGSYRFNRIKKSLKSSSFNKFVSRGFGTGKNVLDPQGPFLQKWNKIFVLSCVIAVSLDPLFFYVPVIDDEKKCLGLDKKMEITASVLRSFTDIFYILHIVFQFRTGFIAPSSRVFGRGVLVEDAWAIAKRYLSSYFLIDILAVLPLPQVVILIIIPNMKGSRSLNTKDLLKFVVFFQYVPRFIRIYPLYKEVTRTSVLTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETTCWQKACRNHTGCVSNSLYCDVSPGNNAFLNTSCPTVGGDNPPFDFGIFLDALNSGVVESMDFPQKFFYCFWWGLRNLSSLGQNLQTSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVRNLPKDLRRDIKRHLCLSLLMRVPIFEKMDEQLLDAMCDRLKPVLYTEESYIVREGDPVDEMIFIMRGKLLSVTTNGGRTGFFNSEHLKAGDFCGEELLTWALDPHSSSNLPISTRTVRTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYRRKKHEQALLEEENRLKDALAKTGGNSPSLGATIYASRFAANILRTIRRTSSRKARIPERIPPMLLQKPAEPDFTSEENS 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1326104 1333152 + Lag0030782.1 Lac11g0144 586002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0144 748 SUPERFAMILY Voltage-gated potassium channels 121 440 - -
Lac11g0144 748 Coils Coil 670 690 - -
Lac11g0144 748 Pfam Cyclic nucleotide-binding domain 539 630 IPR000595 -
Lac11g0144 748 Gene3D Helix hairpin bin 444 509 - -
Lac11g0144 748 SUPERFAMILY cAMP-binding domain-like 447 640 IPR018490 -
Lac11g0144 748 Gene3D Jelly Rolls 516 636 IPR014710 -
Lac11g0144 748 ProSiteProfiles cAMP/cGMP binding motif profile. 518 602 IPR000595 -
Lac11g0144 748 FunFam Cyclic nucleotide-gated ion channel 1 445 509 - -
Lac11g0144 748 FunFam Cyclic nucleotide-gated ion channel 1 516 634 - -
Lac11g0144 748 SMART cnmp_10 518 649 IPR000595 -
Lac11g0144 748 Pfam Ion transport protein 132 445 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g0144 748 Gene3D - 133 442 - -
Lac11g0144 748 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 56 736 - -
Lac11g0144 748 CDD CAP_ED 518 649 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0144 Lac-Chr11:1326104 Lac5g3021 Lac-Chr5:48103085 2.80E-209 dispersed
Lac10g0024 Lac-Chr10:317598 Lac11g0144 Lac-Chr11:1326104 2.10E-44 transposed
Lac6g2474 Lac-Chr6:42515033 Lac11g0144 Lac-Chr11:1326104 2.10E-217 transposed
Lac8g0435 Lac-Chr8:5586285 Lac11g0144 Lac-Chr11:1326104 5.80E-215 transposed
Lac11g0144 Lac-Chr11:1326104 Lac5g3020 Lac-Chr5:48096509 4.70E-55 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0144 K05391 - csv:101221781 1342.79