Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0154 ATGAATAACTACAACAAGCTCCACTCCGACCAAACTCCCTCCAATCCTCCGCCACCACCTCCGCCCTCCTCCTCCTCCCGCCGCCGCCGAATCCTCTTCATCTCCCTCCTCTCCATCCTCCTCCTCGTCGCCTCCGCCGTCTCCGCCGCCGTCCTCGTCCACTCCCACATCACCTCCTCCTCCTCCCAACCCCATTTCCCCCACAACAAACCCACCCAAGCCATCTCCCGCGCCTGCAGCTTCACCCTCTACCCTTCTCTCTGCCTCTCCTCCCTCCTCGCCTTCCCCGCCGCCCTCTCCGCCGACGTCCACGACCTCGTCCACATCTCCCTCAACCTCACTCTCCAACACCTCACCAAAGCCCTCTACTCCTCTTCTCAACTCCCCATCTCCCAACTCTCCGCCGACCCTCTCGCCCTCTCCGCCTATCAAGACTGCATCGAGCTCCTCGCCGACGCCGTCGACGCCTTCTCGCTCTCTCTATTCTCTGCCTCTGCCTCCAACCACGACGTCGTCACCTGGCTCAGCGCCGCCTTGACCTACCACGACACCTGCACCGATGGCTTTGCCGACGTCGCTGGCCCGGTCAAGGAGCAGATGACGGCCAGGCTGAGTGATTTGTCGGAGATGATCAGTAATTCTTTGGCTATCTTTTCTGGGTTTGGCGGCGGGTTGCCGGTGCAGAACAGGCGCCGCCGGTTGATGGAGAGTAATGATGATGCTCGGTGGGCGGCGGAGAATACGGTGGCGGAGGGGGAGTTCCCCGGCTGGGTCACCGGGAAGGATCGCCGGCTTTTGGCTACTCCCATTTCGGCCATTCAGGCGGATATTGTGGTGGCTAAAGATGGCACTGGGAAGTTCAAGACGGTGGCCGAGGCCATTGCGGCGGCGCCGTCGTCCAGTGGTCGCCGGATCGTCATCTACATTAAGGCTGGAAAGTACGAAGAGGAGAATTTGAAGGTGGGAAGGAAGAAAACAAACTTGATGTTTGTGGGAGATGGGAAGGGTATAACCGTCATTTCAGGTGGCAAAAGCGTTTTTGACAAAGTTACCACTTTTCGCACCGCCACCTTTGCGGGTTCTGGAACAGGAATAATCCTACGAGACATGACGTTCGAGAACACGGCGGGACCAGGGAGGCACCAAGCAGTGGCACTCCGCATCAGCGCGGACCACGCGGTGGTATACCGATGCAACATCATCGGATACCAAGACACACTCTACGTGCACTCGAACCGCCAGTTCTTTCGAGAGTGCGACATCTATGGAACTGTAGATTTCATATTCGGGAACGCCGTGGTGGTGTTCCAGAGCTGCAACATCTACGCGAGGAAGCCGATGTCGCAGCAAAAGAACACGATCACGGCGCAGGACCGGAAGGATCCGAACCAGAACACCGGAATCTCGATCCACGCCTGCAAGATCCTAGCCACCTCCGACCTGGAAGCCTCCAAGGGCTCTTTCCCGACGTTCCTCGGCCGGCCTTGGAAATTATACTCTAGAGTCGTCTACATGGTATCTTCCATGGGCGATCACATCCATCCACGTGGATGGCTCGAGTGGCAGGGCTCCTTCGCCCTCGACACTCTTTACTACGGCGAGTATATGAATTCCGGGCCGGGCGCCGCCGTCGGGCAGCGGGTCAAGTGGCCGGGTTATCGGGTCATAACGTCGACCGTTGAAGCCACCAAATTTACTGTCGGGCAGTTTATTTACGGCTCTTCCTGGCTGCCCTCCACTGGCGTGTCGTTTTCTGCTGGATTATCCGCTAACTAA 1776 58.33 MNNYNKLHSDQTPSNPPPPPPPSSSSRRRRILFISLLSILLLVASAVSAAVLVHSHITSSSSQPHFPHNKPTQAISRACSFTLYPSLCLSSLLAFPAALSADVHDLVHISLNLTLQHLTKALYSSSQLPISQLSADPLALSAYQDCIELLADAVDAFSLSLFSASASNHDVVTWLSAALTYHDTCTDGFADVAGPVKEQMTARLSDLSEMISNSLAIFSGFGGGLPVQNRRRRLMESNDDARWAAENTVAEGEFPGWVTGKDRRLLATPISAIQADIVVAKDGTGKFKTVAEAIAAAPSSSGRRIVIYIKAGKYEEENLKVGRKKTNLMFVGDGKGITVISGGKSVFDKVTTFRTATFAGSGTGIILRDMTFENTAGPGRHQAVALRISADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAVVVFQSCNIYARKPMSQQKNTITAQDRKDPNQNTGISIHACKILATSDLEASKGSFPTFLGRPWKLYSRVVYMVSSMGDHIHPRGWLEWQGSFALDTLYYGEYMNSGPGAAVGQRVKWPGYRVITSTVEATKFTVGQFIYGSSWLPSTGVSFSAGLSAN 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1433242 1438786 + Lag0030792.1 Lac11g0154 586012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0154 591 MobiDBLite consensus disorder prediction 1 26 - -
Lac11g0154 591 CDD PMEI-like_3 78 223 - -
Lac11g0154 591 Gene3D Invertase/pectin methylesterase inhibitor family protein 72 221 IPR035513 -
Lac11g0154 591 SUPERFAMILY Pectin lyase-like 271 587 IPR011050 -
Lac11g0154 591 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 73 219 IPR035513 -
Lac11g0154 591 SMART PMEI_2 70 217 IPR006501 GO:0004857(InterPro)
Lac11g0154 591 NCBIfam pectinesterase inhibitor domain 48 219 IPR006501 GO:0004857(InterPro)
Lac11g0154 591 Gene3D - 270 588 IPR012334 -
Lac11g0154 591 ProSitePatterns Pectinesterase signature 2. 421 430 IPR033131 -
Lac11g0154 591 Pfam Pectinesterase 276 573 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac11g0154 591 Pfam Plant invertase/pectin methylesterase inhibitor 74 217 IPR006501 GO:0004857(InterPro)
Lac11g0154 591 PANTHER PECTINESTERASE 31 579 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lac11g0154 591 FunFam Pectinesterase 270 588 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0154 Lac-Chr11:1433242 Lac4g2484 Lac-Chr4:44164172 8.40E-140 dispersed
Lac5g0013 Lac-Chr5:155912 Lac11g0154 Lac-Chr11:1433242 2.70E-123 transposed
Lac5g2079 Lac-Chr5:39361002 Lac11g0154 Lac-Chr11:1433242 1.60E-32 transposed
Lac11g0154 Lac-Chr11:1433242 Lac4g1473 Lac-Chr4:33249614 1.70E-63 wgd
Lac11g0154 Lac-Chr11:1433242 Lac5g3038 Lac-Chr5:48276947 9.10E-211 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0154 - - - 0.0